Pinned Repositories
digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.
extract_xml_region
Code for extracting ROI from annotated structures in Aperio Imagescope
models
Models and examples built with TensorFlow
NSF-LaTeX-Template
LaTeX template for NSF proposals
tfWavelet
A fully differentiable implimentation of the discreate wavelet transform (DWT) in tensorflow
H-AI-L
A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)
tf-WSI-dataset-utils
An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow
tfWavelet
A fully differentiable implimentation of the discreate wavelet transform (DWT) in tensorflow
WSI-cycleGAN
An version of the popular cycleGAN architecture, optimized for whole slide image (WSI) datasets
WSI-ProGAN
A modified version of ProGAN which trains using whole slide images (WSIs). Patches are extracted from WSIs at training time removing the need for WSI chopping.
brendonlutnick's Repositories
brendonlutnick/tfWavelet
A fully differentiable implimentation of the discreate wavelet transform (DWT) in tensorflow
brendonlutnick/extract_xml_region
Code for extracting ROI from annotated structures in Aperio Imagescope
brendonlutnick/digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.
brendonlutnick/models
Models and examples built with TensorFlow
brendonlutnick/NSF-LaTeX-Template
LaTeX template for NSF proposals
brendonlutnick/openslide-matlab
A MATLAB library providing bindings to the C library OpenSlide (https://github.com/openslide/openslide) used for reading whole-slide images.
brendonlutnick/pylut
Create and Modify 3D LUTs in Python!
brendonlutnick/tensorflow-deeplab-v3-plus
DeepLabv3+ built in TensorFlow
brendonlutnick/tf-WSI-dataset-utils
input functions for training neural networks on WSI histology images using tf.dataset input pipelines to gather random WSI patches at runtime