oodles
oodles of small bioinformatics tools in a single binary (using noodles)
base-qual0
set selected base-quality scores in a bam to 0
Usage: oodles base-qual0 [OPTIONS] <INPUT> [OUTPUT]
Arguments:
<INPUT> input bam file
[OUTPUT] output bam file [default: /dev/stdout]
Options:
--left-read1 <LEFT_READ1> clip this many bases from left end of read1 (as aligned) [default: 0]
--right-read1 <RIGHT_READ1> clip this many bases from right end of read1 (as aligned) [default: 0]
--left-read2 <LEFT_READ2> clip this many bases from left end of read2 (as aligned) [default: 0]
--right-read2 <RIGHT_READ2> clip this many bases from right end of read2 (as aligned) [default: 0]
-h, --help Print help