briankarlberg
PhD candidate, Oregon Health and Science University, Biomedical Engineering
OHSUPortland Oregon
Pinned Repositories
ATM
Auto Tune Models - A multi-tenant, multi-data system for automated machine learning (model selection and tuning).
candleDataProcessing
Some scripts to process and collate dose response data
data_model
Schema and synthetic data
drg_rsp_bmeg_extract
get raw response data by cell line / compound for 8 projects
drg_rsp_coding_gene_extract
filter coding genes out of raw BMEG data
drg_rsp_CTRPv2_proto_figs
devel on CTRPv2, 490 compounds
drg_rsp_main
drug response project central repository to coordinate operations repos
Drug_Response_Prediction
Computational drug response prediction using transcriptomic data
gdan-tmp-models
gdan-tmp-webdash
briankarlberg's Repositories
briankarlberg/ATM
Auto Tune Models - A multi-tenant, multi-data system for automated machine learning (model selection and tuning).
briankarlberg/candleDataProcessing
Some scripts to process and collate dose response data
briankarlberg/data_model
Schema and synthetic data
briankarlberg/drg_rsp_bmeg_extract
get raw response data by cell line / compound for 8 projects
briankarlberg/drg_rsp_coding_gene_extract
filter coding genes out of raw BMEG data
briankarlberg/drg_rsp_CTRPv2_proto_figs
devel on CTRPv2, 490 compounds
briankarlberg/drg_rsp_main
drug response project central repository to coordinate operations repos
briankarlberg/Drug_Response_Prediction
Computational drug response prediction using transcriptomic data
briankarlberg/gdan-tmp-models
briankarlberg/gdan-tmp-webdash
briankarlberg/GDAN_TMP_sample_count
briankarlberg/grip
Graph Integration Platform
briankarlberg/lab-website
briankarlberg/mdl-sys-bnchmrk
Cancer model systems benchmarking
briankarlberg/ML_643
Reinforcement learning Q-table, ML 643 class final project
briankarlberg/MuSIC
Multi-Scale Integrated Cell
briankarlberg/python-reference
Python Reference (The Right Way)
briankarlberg/sklearn_accuracy
raw accuracy calculations by subtype
briankarlberg/sklearn_repo
briankarlberg/Spoon-Knife
This repo is for demonstration purposes only.
briankarlberg/sub-sample_drug_response
Apply sub-sampling framework from cancer sub-typing to cancer drug response in cell lines
briankarlberg/TieDIE
Tied Diffusion for Subnetwork Discovery (TieDIE)
briankarlberg/VAE_DL_II
Hello world for Deep Learning II class
briankarlberg/work_samples
ML-based analysis of multi-omic cancer data
briankarlberg/Zenodo_DOI
Test getting a DOI with Zenodo for a GitHub repo