brianreicher/cb2_project_analysis

Analysis source code for CB2 project

CB2 project

This code repository accompanies the Nature 2023 publication Structured cerebellar connectivity supports resilient pattern separation (paywall-free ShareIT link).

Updates!

• March 6 2023: we added NetworkX graph files and examples to graphs. Using NetworkX is easier and more portable than previous legacy formats.

Dataset browser

Open viewer

Example mesh reconstructions

These are mesh renderings that have been exported (as lists of segments) from our proofreading platform's database (MDSeg). Unfortunately at this point the infrastructure is not yet capable of allowing randomly accessing neurons, though this may be added in the future.

Granule cells

• Two adjacent granule cells: viewer
• A few granule cells: viewer

Purkinje cells

WARNING: These neurons are huge. Make sure you have free RAM (4GB+) before loading.

• "purkinje_0" cell: viewer
• "pc_9" cell: viewer
• "pc_15" cell: viewer

Analysis source code

See analysis for more information.

Downloadable NetworkX graphs

See graphs for more information.

Related software

• Daisy: a blockwise task scheduler for processing large nD datasets.
• MDSeg: a merge-deferred, targeted proofreading platform based on Neuroglancer
  • Modified Neuroglancer front-end
  • Python back-end

License

This software is licensed under the MIT license.