broadinstitute/StrainGE

Installation instructions do not work with micromamba

Opened this issue · 1 comments

Hi Lucas (and Bruce)!

Since StrainGE requires python ≥3.9,<3.10, not specifying python=3.9 during creation of the environment will cause the installation to fail.

Hope all is well!
Tim

The bioconda ecosystem is a little bit of a mess these days with many packages only being built for a limited number of Python versions. I've asked on their Github issues page why this is the case. As a workaround, the PyPI version should just install fine.

And you could specify that in your mamba env as:

dependencies:
  ..
  pip:
    - strainge