broadinstitute/seqr

Issues

• Local installs can view internal fields

  #4484 opened 2 months ago by anjalijain22
  8

• Local install error: "database "reference_data_db" does not exist"

  #4504 opened 2 months ago by AunErki
  4

• Update seqr VLM text to include prompts

  #4520 opened 2 months ago by lynnpais
  0

• Missing OMIM gene association and genCC from variant pages

  #4502 opened 3 months ago by msingerb
  1

• PanelApp gene list customizations are not preserved in saved searches

  #4496 opened 3 months ago by Caustint
  2

• Annotate new variants with new reference data sources

  #4474 opened 3 months ago by jklugherz
  0

• handle clinvar reference data source special case

  #4475 opened 3 months ago by jklugherz
  0

• create single source reference data tables

  #4471 opened 3 months ago by jklugherz
  1

• Refactor reference data tables

  #4472 opened 3 months ago by jklugherz
  0

• Update reference data sources

  #4473 opened 3 months ago by jklugherz
  0

• Move CachedReferenceDatasetQueries to reference data config.

  #4476 opened 3 months ago by bpblanken
  0

• Use Airtable for RNA sample project mapping

  #4500 opened 3 months ago by lynnpais
  0

• Allow only new samples to be loaded to an AnVIL project

  #4379 opened 3 months ago by lynnpais
  2

• Project-wide recessive searches fail if SV anntotations are selected

  #4481 opened 3 months ago by Caustint
  3

• Sex & Relatedness PDOs automatically labelled "available in Seqr"

  #4490 opened 3 months ago by matren395
  1

• Error while doing a custom search

  #4489 opened 3 months ago by MugdhaSingh1819
  3

• Investigate linkerd downtime during cron jobs

  #4444 opened 3 months ago by lynnpais
  1

• Permission errors trying to load or edit bam files for IGV

  #4424 opened 4 months ago by pfpetrowski
  4

• seqr export upload

  #4466 opened 3 months ago by evamar22
  9

• Refresh saved searches

  #4450 opened 3 months ago by lynnpais
  3

• In Silico Filters

  #4420 opened 4 months ago by paolomaccallini-hub
  2

• Add `brain` to `RnaSample` `TISSUE_TYPE_CHOICES`.

  #4397 opened 4 months ago by bpblanken
  1

• `SIMPLIFIED_SEX_LOOKUP` in `PedigreeIcon` throws uncaught exception for `Unknown` sex.

  #4447 opened 4 months ago by bpblanken
  1

• Blank page when trying to open specific cases

  #4452 opened 4 months ago by eoheir
  2

• Add known sex aneuploidy info to seqr

  #4404 opened 4 months ago by lynnpais
  7

• Cached gene breakdown does not work with compound hets in hail backend

  #4441 opened 4 months ago by hanars
  0

• Add project name to notification about new data loaded

  #4445 opened 4 months ago by lynnpais
  0

• Document search logic

  #4428 opened 4 months ago by lynnpais
  0

• Update text for tag: Submit to ClinVar

  #4439 opened 4 months ago by lynnpais
  2

• Blank page when trying to access MME submissions in a project

  #4438 opened 4 months ago by lynnpais
  1

• Variants being returned that don't meet search criteria (Missense, VUS)

  #4409 opened 4 months ago by lynnpais
  2

• Keep genotypeFilters as sample-level annotation instead of variant-level

  #4390 opened 4 months ago by hanars
  0

• Modify hail search startup behavior to crawl directories for expected annotations tables.

  #4360 opened 4 months ago by bpblanken
  0

• Change check new samples to cron job

  #4358 opened 4 months ago by hanars
  0

• Cap MME submissions

  #4378 opened 4 months ago by lynnpais
  2

• Add columns to "Bulk Edit Individual Metadata" table

  #4328 opened 4 months ago by apham98
  2

• Show luigi UI in seqr

  #4402 opened 4 months ago by lynnpais
  2

• Download

  #4421 opened 4 months ago by paolomaccallini-hub
  0

• SVs being returned when annotation not selected

  #4408 opened 4 months ago by lynnpais
  1

• Blank page when selecting saved variants bar

  #4407 opened 4 months ago by lynnpais
  1

• Fix failing search case

  #4403 opened 5 months ago by jklugherz
  0

• Group families for Variant Lookup

  #4340 opened 5 months ago by lynnpais
  1

• Rename environment variables in hail search service.

  #4359 opened 5 months ago by bpblanken
  1

• Add documentation for seqr on Azure

  #4389 opened 5 months ago by lynnpais
  1

• Error while creating superuser

  #4384 opened 5 months ago by AunErki
  0

• Local install loading enhancements

  #4342 opened 5 months ago by hanars
  0

• Add endpoint to `hail-search` service that reloads annotations globals.

  #4361 opened 5 months ago by bpblanken
  1

• Unhandled error for invalid family page Url

  #4371 opened 5 months ago by hanars
  0

• Used tags for variants visible in other cases

  #4344 opened 5 months ago by epouilli
  3

• Search filter allele balance in a family - mosaicism in a parent is missed

  #4343 opened 5 months ago by epouilli
  2