broadinstitute/seqr

Unable to upload table of analyzed family ids via the External Analysis UI

Closed this issue · 3 comments

bw2 commented

I'm trying to update the list of cases included in my most recent STR analysis @ https://seqr.broadinstitute.org/summary_data/external_analysis

I consistently get this error:

image

The table I'm uploading looks like:

Project	Family
CMG_PCGC_WGS	1-12345
CMG_PCGC_WGS	1-12346
CMG_PCGC_WGS	1-12347
...
hanars commented

It takes a while for large files to upload. Are you waiting until the file upload is complete before hitting submit? Until you see a blue box with a summary of the data that was parsed from the upload, do not hit submit

bw2 commented

The file is small (< 1Mb). There's this JS error in the console:

image
hanars commented

this file includes external seqr projects and is not valid to be loaded to seqr. The error is realted to nginx flagging a project with the work "copy" in its name as unsafe, which would not be an issue if we were only including valid internal projects