Add ClinGen Allele ID (CA#) to GREGoR report and variant metadata
stephditroia opened this issue · 2 comments
Is your feature request related to a problem? Please describe.
We want to list ClinGen Allele IDs (CA#) for each variant on the variant metadata page and in the GREGoR report.
Describe the solution you'd like
-
Variant metadata: Add a
ClinGen allele ID
column to the Variant Metadata page and populate with each variant's CA#. This column was recently replaced by 'Clinvar allele ID': #4007
Fine to replace Clinvar allele ID in the variant metadata if we don't want to keep both. -
GREGoR report: Populate the
ClinGen_allele_ID
column in the genetic_findings table with the appropriate variant CA#. Leave column blank with CA# not available. GREGoR data model V1.5 mapping
We should also add this to the regular saved variant download/ search results download
This has been added