broadinstitute/seqr

List 'trios+' numbers on project page

Opened this issue · 0 comments

Is your feature request related to a problem? Please describe.
I am trying to track the number of trios with data in a project (i.e. data for proband/mom/dad at minimum). The project page lists trios in the family of 3, but does not list trios for families of 4+.
image

Describe the solution you'd like
I would like to list trios+ under families with 4 individuals and families with 5+ individuals. Logic to calculate would be as follows (listing quads here but I'm ok with dropping quad and quad+ if it's too complicated):

  • duo = proband + parent
  • trio = proband + mom + dad
  • quad = proband + mom + dad + sibling
  • trio+ = proband + mom + dad + other family member
  • quad+ = proband +mom + dad + sibling + other family member

Additional comments / alternative solutions
Families With Data section should only count family members with data to determine family structure.
An alternative place to find this information is on the family metadata page, but family_structure in family metadata is not requiring data for mom and data to call trio at the moment.