Pinned Repositories
2015-docker-building
2016-illo-rtd
2016-sourmash-abundstuff
2017-cicese-metagenomics
2017-dibsi-metagenomics
Workshop materials for shotgun metagenomics
2017_Hum_and_murine_microbiota_mouse_analysis
2017_sourmash_gather_comparison
comparing sourmash gather functionality to other tools with similar capabilities
sourmash
Compute and compare MinHash signatures for DNA data sets.
dahak
benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
2017-cicese-metagenomics
brooksph's Repositories
brooksph/2017_Hum_and_murine_microbiota_mouse_analysis
brooksph/2017_sourmash_gather_comparison
comparing sourmash gather functionality to other tools with similar capabilities
brooksph/2017-cicese-metagenomics
brooksph/2017-dibsi-metagenomics
Workshop materials for shotgun metagenomics
brooksph/2017-dibsi-rnaseq
brooksph/2017_Dysfunction_of_the_gut_microbiome
brooksph/2017_Humanized_micrbiota_16S_comparison
brooksph/2017_sbt_search_project
brooksph/2017_sourGUT
brooksph/2017_viral_genome_association_study
Extracting viral genomes from shotgun metagenomes using sourmash
brooksph/2020-workflows-paper
Strategies for leveraging workflow systems to streamline large-scale biological analyses
brooksph/abstracts
Abstracts for meetings
brooksph/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
brooksph/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
brooksph/bioconda-recipes
Conda recipes for the bioconda channel.
brooksph/brooksph.github.io
Personal website
brooksph/dahak
benchmarking and containerization of tools for analysis of complex non-clinical metagenomes
brooksph/Dahak_examples
Example notebooks for end user data exploration
brooksph/dahak_notes
Notes for Dahak project
brooksph/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
brooksph/Kraken_db_install_scripts
Updated Kraken DB install scripts to cope with new-ish NCBI structure
brooksph/organization-genomics
brooksph/PR2017replicaton
brooksph/py-upset
A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
brooksph/reference_genome_exploration
brooksph/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
brooksph/shell-novice
Software Carpentry introduction to the shell for novices.
brooksph/shotmap
A Shotgun Metagenome Annotation Pipeline
brooksph/tara-sourmash
brooksph/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..