BioRetroSynth
Our group is interested in synthetic biology and systems metabolic engineering in whole-cell and cell-free systems.
France
Pinned Repositories
active_learning_cell_free
Scripts to perform active learning as described in the referenced article.
amn_release
icfree-ml
Design of experiments (DoE) and machine learning packages for the iCFree project
neo4jsbml
Bridge the gap between SBML data and Neo4j
RetroPath2-wrapper
Python wrapper for Retropath2.0 Knime workflow
RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
rp2paths
RetroPath2.0 to pathways
rpreactor
A command-line and python package to handle biochemical reaction rules.
rptools
Suite of tools that work on rpSBML format
straindesign
Library to perform metabolic engineering tasks
BioRetroSynth's Repositories
brsynth/RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
brsynth/rp2paths
RetroPath2.0 to pathways
brsynth/active_learning_cell_free
Scripts to perform active learning as described in the referenced article.
brsynth/RetroPath2-wrapper
Python wrapper for Retropath2.0 Knime workflow
brsynth/rptools
Suite of tools that work on rpSBML format
brsynth/amn_release
brsynth/straindesign
Library to perform metabolic engineering tasks
brsynth/icfree-ml
Design of experiments (DoE) and machine learning packages for the iCFree project
brsynth/neo4jsbml
Bridge the gap between SBML data and Neo4j
brsynth/RRParser
Reaction rules parser
brsynth/rxn_rebuild
Rebuild full reaction from reaction rule
brsynth/selenzy-wrapper
brsynth/brs-utils
Utilities
brsynth/DNA-BOT
brsynth/rpbasicdesign
Convert rpSBML file to SBOL + CSV files ready to be used by DNA-Bot.
brsynth/AMN_refactor
This is a simple refactorization of some use case of the AMN code
brsynth/extractor_brendapy
brsynth/.github
brsynth/bioconda-recipes
Conda recipes for the bioconda channel.
brsynth/brendapy
BRENDA parser in python
brsynth/brsynth.github.io
Website landing page
brsynth/galaxy
Data intensive science for everyone.
brsynth/galaxytools
Galaxy wrappers of SynBioCAD tools suite
brsynth/neo4jsbml-feedstock
A conda-smithy repository for neo4jsbml.
brsynth/rpbasicdesign-feedstock
A conda-smithy repository for rpbasicdesign.
brsynth/rr_cache
RetroRules Cache
brsynth/rrparser-feedstock
A conda-smithy repository for rrparser.
brsynth/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
brsynth/taxonid
Get taxon id from NCBI taxonomy database
brsynth/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission