Unable to find image 'brwnj/covviz:v1.3.2' locally
robertwhbaldwin opened this issue · 2 comments
I'm getting an error when trying to run covviz with nextflow. I'm new to docker/nextflow and was hoping that someone would be able to identify the problem as I followed all the instructions on the covviz page. thanks - Robert
./nextflow run brwnj/covviz -profile docker --exclude --sex --indexes '/media/robert/External_Drive/BAMS/*.bai' --fai /home/robert/assembly/GCF_014851395.1_ASM1485139v1_genomic.fa.fai
N E X T F L O W ~ version 21.04.2
Launching brwnj/covviz [focused_wilson] - revision: 614537d [master]
====================================================================
covviz - find large, coverage-based variations on chromosomes
Homepage / Documentation
https://github.com/brwnj/covviz
Authors
Joe Brown brwnjm@gmail.com
====================================================================
Alignment indexes --indexes : /media/robert/External_Drive/BAMS/*.bai
Reference index --fai : /home/robert/assembly/GCF_014851395.1_ASM1485139v1_genomic.fa.fai
Sex chromosomes --sexchroms : X,Y
Excluded chroms --exclude : true
Z threshold --zthreshold : 3.5
Distance threshold --distancethreshold: 150000
Significant region slop --slop : 500000
====================================================================
executor > local (1)
[b1/5a449d] process > run_indexcov [ 0%] 0 of 1
executor > local (1)
[b1/5a449d] process > run_indexcov [100%] 1 of 1, failed: 1 ✘
[- ] process > merge_peds -
[- ] process > build_report -
Error executing process > 'run_indexcov'
Caused by:
Process run_indexcov terminated with an error exit status (125)
Command executed:
goleft indexcov --sex X,Y --excludepatt "true" --directory NF --fai GCF_014851395.1_ASM1485139v1_genomic.fa.fai RHF05438.bam.bai RHF05338.bam.bai RHF05342.bam.bai RHF05347.bam.bai RHF05358.bam.bai RHF05397.bam.bai RHF05432.bam.bai RHF05301.bam.bai G0620_M02.bam.bai RHF05302.bam.bai RHF05350.bam.bai G0319-20-B0074.bam.bai G0319-20-B0115.bam.bai G0319-20-B0117.bam.bai G0520-1-G359.bam.bai RHF05357.bam.bai RHF05398.bam.bai RHF05440.bam.bai RHF05444.bam.bai RHF05462.bam.bai RHF05464.bam.bai RHF05453.bam.bai RHF05431.bam.bai RHF05421.bam.bai RHF05452.bam.bai
mv NF/* .
Command exit status:
125
Command output:
(empty)
Command error:
Unable to find image 'brwnj/covviz:v1.3.2' locally
docker: Error response from daemon: manifest for brwnj/covviz:v1.3.2 not found: manifest unknown: manifest unknown.
See 'docker run --help'.
Work dir:
/home/robert/tools/work/b1/5a449d420115e8ca3bd6be1f35bae0
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named .command.sh
I think the problem is related to the docker image tag. shouldn't it be looking for covviz:latest?
When I run sudo docker images there's no image v1.3.2.
REPOSITORY TAG IMAGE ID CREATED SIZE
brwnj/covviz latest b90835069977 2 months ago 1.37GB
hello-world latest d1165f221234 4 months ago 13.3kB
aakechin/ngs-primerplex native 7df8a7df6a5f 4 months ago 680MB
brentp/smoove latest bdf809472b6a 8 months ago 2.68GB
UPDATE: i updated the image tag to read v1.3.2 instead of latest and it ran
fixed it. i pushed to latest but didn't include the 1.3.2 tag. should work now