/bioconvert

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

Bioconvert

Bioconvert is a project to facilitate the interconversion of life science data from one format to another.

https://secure.travis-ci.org/biokit/bioconvert.png https://coveralls.io/repos/github/biokit/bioconvert/badge.svg?branch=master Documentation Status
note:Bioconvert is tested with Travis for the following Python version: 3.5 and 3.6. Python 2 won't be provided.
contributions:Please join https://github.com/biokit/bioconvert
issues:Please use https://github.com/biokit/bioconvert/issues

Installation

In order to install bioconvert, you can use pip:

pip install bioconvert

Usage

bioconvert input.fastq output.fasta
bioconvert input.fq output.fasta
bioconvert input.mybam output.bed --input-format bam
bioconvert --formats
bioconvert --help