brycecr/msmexplorer

Issues

• Trying to modify TPTSetupBox to take in CSV input

  #59 opened 9 years ago by cxhernandez
  0

• TPT Output

  #54 opened 9 years ago by cxhernandez
  3

• TPT is incorrect when no populations are loaded

  #58 opened 11 years ago by schwancr
  0

• bug in net flux calculation?

  #56 opened 11 years ago by schwancr
  0

• problem with the curved edges curving the wrong way

  #55 opened 11 years ago by schwancr
  2

• Extract (and display) flux per pathway segment

  #53 opened 11 years ago by gkiss
  2

• TPT Consistency between MSMBuilder and MSMExplorer

  #52 opened 11 years ago by tjlane
  0

• newline file selector should default to .dat, not .mtx

  #51 opened 12 years ago by brycecr
  0

• change macrostate sample names

  #50 opened 12 years ago by brycecr
  0

• mysterious crash on node size slider?

  #49 opened 12 years ago by brycecr
  0

• only one vis settings window open at a time

  #48 opened 12 years ago by brycecr
  0

• better distance metric for TPT layout; arbitrary arrays for 2D layout axes

  #10 opened 12 years ago by brycecr
  2

• adjust concavity of curved edges?

  #47 opened 12 years ago by brycecr
  0

• Tooltips for nodes and edges?

  #46 opened 12 years ago by brycecr
  0

• SVG writer bugs

  #45 opened 12 years ago by brycecr
  0

• documentation for the new button about tpt visibility

  #44 opened 12 years ago by brycecr
  0

• let people know if their probabilities look wonky.

  #43 opened 12 years ago by brycecr
  0

• remember last open location

  #42 opened 12 years ago by brycecr
  0

• is size threshold reasonable?

  #41 opened 12 years ago by brycecr
  0

• let people turn off node stroke?

  #40 opened 12 years ago by brycecr
  0

• set images to not automatically be lib/whatever

  #39 opened 12 years ago by brycecr
  1

• stuff to add to msmexplorer doc

  #38 opened 12 years ago by brycecr
  0

• PDB handling smoother

  #36 opened 12 years ago by brycecr
  0

• More PDBServer and image handling adjusments

  #37 opened 12 years ago by brycecr
  0

• reversing size ranges?

  #35 opened 12 years ago by brycecr
  0

• graphml export of just subset of data cols?

  #34 opened 12 years ago by brycecr
  0

• ability to save out data columns

  #33 opened 12 years ago by brycecr
  0

• visibility filters for any data type?

  #32 opened 12 years ago by brycecr
  0

• allow ppl to load images after not loading them...

  #31 opened 12 years ago by brycecr
  0

• complete support for graphml files.

  #18 opened 12 years ago by brycecr
  2

• the resize-zoom issue for images on nodes.

  #9 opened 12 years ago by brycecr
  1

• don't allow fractional label spacing on integer values...

  #20 opened 12 years ago by brycecr
  1

• notes on axis stuff

  #13 opened 12 years ago by brycecr
  2

• arbitrary axis layout for TPTview

  #21 opened 12 years ago by brycecr
  1

• allow setting of datasizeactions through a gui for any reasonable visualitem stuff

  #26 opened 12 years ago by brycecr
  0

• scale type comboboxes for dataactions in vis settings

  #30 opened 12 years ago by brycecr
  0

• new image factory to cache originals instead of just scaled ones.

  #29 opened 12 years ago by brycecr
  0

• merge TPT window into GraphView

  #28 opened 12 years ago by brycecr
  0

• fix Y-axis label to notice the width of y-axis grid labels.

  #27 opened 12 years ago by brycecr
  0

• allow opening of PDB's

  #25 opened 12 years ago by brycecr
  0

• hierarchy open up to selected node parent/child.

  #24 opened 12 years ago by brycecr
  0

• fixing the image save pipe

  #22 opened 12 years ago by brycecr
  1

• change default force parameters?

  #23 opened 12 years ago by brycecr
  0

• if someone gives us counts, translate counts to probabilities

  #14 opened 12 years ago by brycecr
  1

• Do movie stuff.

  #19 opened 12 years ago by brycecr
  0

• a decent logging facility.

  #17 opened 12 years ago by brycecr
  0

• interaction of aggregates and dist slider

  #11 opened 12 years ago by brycecr
  0

• automatically look for likely eqProb files when someone opens a normal MSM

  #15 opened 12 years ago by brycecr
  0

• interactivity of axis labels in tptWindow...

  #12 opened 12 years ago by brycecr
  1

• remember last load/save location and start dialogs from there...maybe...

  #16 opened 12 years ago by brycecr
  0