/VAEN

A deep generative neural network based approach to impute drug response

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VAEN

A deep generative neural network based approach to impute drug response

--main Code and results for different preprocessing methods and VAE

--DATA Data required to run all codes, including the downloaded data for CCLE, GDSC, and TCGA

--Figure Code to reproduce all figures

--result VAE results for RANK+Sigmoid

--result.EN VAEN results for CCLE (dr.CCLE) and GDSC (dr.GDSC). These are the imputed drug response for CCLE (cell lines), GDSC (cell lines), and TCGA (cancer samples).

--MC3 TCGA mutation data.

--code Other supporting code