How to draw the visialization of the LDSC regression plot like its NG paper?

Question

How to draw the visialization of the LDSC regression plot like its NG paper?

Opened this issue 6 months ago · 3 comments

How to draw the visualization of the LDSC regression plot like its NG paper?
I would like to draw one figure like your NG paper for this wonderful LDSC tool, but I could not find any information on it in the Github tutorial? Is there a way for me to make that figure when using LDSC analysis?

Answer 1 · 2024-01-21T16:27:58.000Z

It should be like this

Answer 2 · 2024-02-14T13:44:45.000Z

I have the same question. If you find out how to reproduce the plot and what data to use, let me know!

Answer 3 · 2024-05-05T20:31:15.000Z

@leoarrow1 @helenewetekam Compute non-partitioned LD scores (or use column base from the pre-computed LD scores) and plot them against the squared z-score from your GWAS for each SNP.