Issues
- 6
Suitable w_hm3.snplist for AFR?
#407 opened by beckse - 0
African data analysis
#433 opened by xEmz - 4
- 3
- 1
INTERCEPT FLAG
#431 opened by zara03 - 11
Is it necessary to use the --merge-alleles parameter when doing genetic correlation in ldsc?
#425 opened by dqq0404 - 2
Could anyone send me the "eas_ldscores.tar.bz2"? I wanted to calculate the ldsc of Asia, but I found I didn't have such file. And I can't download it from cloud. If anyone can send me it, my e-mail is chenqiwjc@gmail.com. Thank you so much.
#402 opened by MikeKiki101 - 1
rg with sample overlap
#419 opened by Cui4399 - 1
Sample size with repeated observations
#415 opened by ldehoyos - 2
Causes for Ratio < 0 other than GC?
#427 opened by tgbrooks - 4
MemoryError: When running LDSCORE analysis
#426 opened by chirrie - 3
ERROR: P<1e-300
#418 opened by jielab - 6
lsdc :IndexError: list index out of range
#421 opened by chirrie - 1
correlation value higher than 1
#410 opened by yildizkoca - 3
How to draw the visialization of the LDSC regression plot like its NG paper?
#413 opened by laleoarrow - 1
Missing frequency from GWAS
#424 opened by ariadnacilleros - 1
- 4
https://data.broadinstitute.org/alkesgroup/LDSCORE/eur_w_ld_chr.tar.bz2 download problem?
#429 opened by zara03 - 2
Can't run ldsc under screen at Linux
#417 opened by eightYao2 - 1
./ldsc.py -h Illegal instruction (core dumped)
#423 opened by xiaomu125 - 5
munge_sumstats.py taking forever to complete analysis
#420 opened by chirrie - 0
NotImplementedError: iLocation based boolean indexing on an integer type is not available
#422 opened by XochitlDiaz - 1
Question about partitioned LDSC
#388 opened by syuxuan - 1
Partitioned genetic correlation
#411 opened by AEAEAESSC - 1
Need LDSC file
#414 opened by zainab-cpu - 2
Where to obtain "hapmap3_snps.tgz"?
#386 opened by juditcd - 0
how to get the filtered snps
#416 opened by yingyuan830 - 3
'Could not find a signed summary statistic column.')
#405 opened by yuupei - 5
eas_ldscores.tar.bz2
#382 opened by 1667857557 - 1
Cell type specific analyses
#412 opened by AEAEAESSC - 1
tutorial request
#395 opened by astrid12345 - 1
bucket seems to be unavailable
#409 opened by M-xiao815 - 6
How to obtain the file "w_hm3.snplist.bz2"
#384 opened by keypanqi - 5
1kg_eur.tar.bz2 not found
#403 opened by kf-cuanschutz - 0
Error running LD score regression
#408 opened by yildizkoca - 0
Add CM and MAF file to LD Score output .gz
#406 opened by lannandc - 4
Error: Missing some LD scores from cts files. Are you sure all SNPs in ref-ld-chr are also in ref-ld-chr-cts
#385 opened by danyfersa - 2
- 0
- 1
- 0
- 2
s-LDSC continuous annotations
#394 opened by aiim-lab - 1
Error calculating heritability
#389 opened by DelnazRoshandel - 0
Error with 'python mtag.py -h'
#398 opened by isobel16 - 0
Error with 'python mtag.py -h'
#397 opened by isobel16 - 0
--overlap-annot does not recognize path in --annot
#396 opened by nickorka - 1
IndexError: list index out of range
#392 opened by aydanasg - 0
How to test the null hypothesis of rg=1
#390 opened by Apprentice2 - 0
merge-alleles: command not found
#387 opened by Hisewetty - 0
Could I set the number of chromosomes in LDSC?
#383 opened by Tengjun0520