Pinned Repositories
behavior_tagging
GUI to categorize specific rodent behavior in a video, save corresponding frame indices and visualize the results.
diploid_assembly_sv_detection
Pipeline for reference-free detection of structural variants. Simplified adaptation of https://github.com/ptrebert/project-diploid-assembly for better understanding.
encorr
Building Neural Connectivity Networks via Cross-Correlation Analysis
functional_genomics
Custom scripts used for the 'Functional Genomics' project at the Max-Planck-Institute for Molecular Genetics, Berlin by Persia Akbari Omgba, Mara Steiger and Nico Alavi
geogenome
Machine Learning in Bioinformatics: Genome Geography
led_detection
Program to detect an LED light in a video and saves the corresponding frame indices.
liftover_T2T
Chain files and scripts for coordinate conversions between hg38 and CHM13 (T2T assembly).
manta
Structural variant and indel caller for mapped sequencing data
neural_network_workshop
Lab Retreat Neural Network Workshop
pedx
Integrating pedigree information into linked-read based haplotyping for phasing SVs.
burgshrimps's Repositories
burgshrimps/liftover_T2T
Chain files and scripts for coordinate conversions between hg38 and CHM13 (T2T assembly).
burgshrimps/geogenome
Machine Learning in Bioinformatics: Genome Geography
burgshrimps/led_detection
Program to detect an LED light in a video and saves the corresponding frame indices.
burgshrimps/pedx
Integrating pedigree information into linked-read based haplotyping for phasing SVs.
burgshrimps/behavior_tagging
GUI to categorize specific rodent behavior in a video, save corresponding frame indices and visualize the results.
burgshrimps/diploid_assembly_sv_detection
Pipeline for reference-free detection of structural variants. Simplified adaptation of https://github.com/ptrebert/project-diploid-assembly for better understanding.
burgshrimps/encorr
Building Neural Connectivity Networks via Cross-Correlation Analysis
burgshrimps/functional_genomics
Custom scripts used for the 'Functional Genomics' project at the Max-Planck-Institute for Molecular Genetics, Berlin by Persia Akbari Omgba, Mara Steiger and Nico Alavi
burgshrimps/manta
Structural variant and indel caller for mapped sequencing data
burgshrimps/neural_network_workshop
Lab Retreat Neural Network Workshop
burgshrimps/sarcoma_carcinosarcoma
Descriptive statistics of clinical dataset about sarcoma and carcinosarcoma patients
burgshrimps/timestamp_correction
Program to correct video timestamps recorded with a highspeed camera by using anchor points.
burgshrimps/Sniffles
Structural variation caller using third generation sequencing