bvaisvil
Software Engineer, Computer Scientist, Accidental Biologist doing Bioinformatics, Statistics, and Biology.
@myriadgenetics Chicago, IL
Pinned Repositories
ape
analysis of phylogenetics and evolution
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
bbmap_docker
Docker build for bbmap
Boleracea-AssociativeTranscriptomics
CLEAN
CLEAN: a contrastive learning model for high-quality functional prediction of proteins
cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
elaspic2
Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.
sysinfo
A system handler to get information and interact with processes written in Rust
zenith
Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage
bvaisvil's Repositories
bvaisvil/zenith
Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage
bvaisvil/sysinfo
A system handler to get information and interact with processes written in Rust
bvaisvil/ape
analysis of phylogenetics and evolution
bvaisvil/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
bvaisvil/bbmap_docker
Docker build for bbmap
bvaisvil/Boleracea-AssociativeTranscriptomics
bvaisvil/CLEAN
CLEAN: a contrastive learning model for high-quality functional prediction of proteins
bvaisvil/cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
bvaisvil/DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
bvaisvil/elaspic2
Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.
bvaisvil/heim
Cross-platform async library for system information fetching 🦀
bvaisvil/homebrew-zenith
bvaisvil/jupyter_metagenome_docker
Jupyter Docker for Replicon Metagenome Analysis - setup with phyloseq, metagenomeseq, deseq2, dada2, ggplot2, ggvegan, ggpubr
bvaisvil/lefse
bvaisvil/LG
bvaisvil/linux-taskstats-rs
Rust interface for Linux taskstats
bvaisvil/metapi
A general metagenomics data mining system focus on robust microbiome research
bvaisvil/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
bvaisvil/NanoPlot
Plotting scripts for long read sequencing data
bvaisvil/PyAGH
A package for calculating kinship matrix
bvaisvil/pyBigWig
A python extension for quick access to bigWig and bigBed files
bvaisvil/pyMSAviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
bvaisvil/react-alignment-viewer
📊 A React component to interactively view multiple sequence alignments (MSA).
bvaisvil/react-msa-viewer
React rerelease of MSAViewer
bvaisvil/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
bvaisvil/twas_sim
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.