This code is related to the following paper, Estimating the Entropy Rate of Finite Markov Chains with Application to Behavior Studies, presently found at https://arxiv.org/abs/1711.03962
- entropyRate.R : Functions for estimating the entropy rate of finite Markov chains.
- 01_simulations_firstorder_bootstrap.R : Simulations for Sections 4.1 and 4.2
- 01_visualizations.R : Visualizations for Sections 4.1 and 4.2
- 02_mth_order_sims.R : Simulations & Visualizations for Section 4.3
- 03_rodent_application.R : Visualizations & Tables for Section 5. Please Contact Brian Vegetabile for access to the data.
- swlz_c.cpp : C++ implementation of Lempel-Ziv Entropy Rate estimation