Pinned Repositories
betaGalCounter
An image processing program which counts cells from microscope images and then identifies the beta gal positive ones (blue).
carTrackComputer
cell_counter
This program detects heterogenous droplets and subsequently determines if the droplet contains a cell or not. A lower accuracy version is fully functional in the file 'Cell Lysis Analyzer_1.1.py'
colony_counter
This program quantifies the colones grown in a 3D agar matrix. The program outputs both the number of colonies in each image as well as its cross sectional area in a .csv
FilmScanner
Software for a Raspberry Pi powered 12 bit-depth 12mp film scanner!
HCC_CTCSeq_Analysis
Code for analyzing the HCC and CLD data associated with the papers submission
HomeDashboard
scRNASeq-CNVCaller
scRNASeq based CNV caller created as a part of COMS 4761
SequencingUtilities
A library of templates for my sequencing utilities
gcsfs
Pythonic file-system interface for Google Cloud Storage
bweasels's Repositories
bweasels/FilmScanner
Software for a Raspberry Pi powered 12 bit-depth 12mp film scanner!
bweasels/betaGalCounter
An image processing program which counts cells from microscope images and then identifies the beta gal positive ones (blue).
bweasels/carTrackComputer
bweasels/cell_counter
This program detects heterogenous droplets and subsequently determines if the droplet contains a cell or not. A lower accuracy version is fully functional in the file 'Cell Lysis Analyzer_1.1.py'
bweasels/colony_counter
This program quantifies the colones grown in a 3D agar matrix. The program outputs both the number of colonies in each image as well as its cross sectional area in a .csv
bweasels/HCC_CTCSeq_Analysis
Code for analyzing the HCC and CLD data associated with the papers submission
bweasels/HomeDashboard
bweasels/scRNASeq-CNVCaller
scRNASeq based CNV caller created as a part of COMS 4761
bweasels/SequencingUtilities
A library of templates for my sequencing utilities