bwmr
PhD student at Medalia Lab, University of Zurich
Department of Biochemistry, University of Zurich
Pinned Repositories
microbiome_morphology
Code and Data related to Wimmer and Morais et al (2023)
mod2mask
Creates binary mask from imod boundary model.
napari-segselect
Napari Plugin to clean membrain-seg segmentations
orientation-filter
Filter particles by stable orientation across refinements.
seg-select
Turn voxel-segmentations to binary based on voxel value
sizepicker
Pick blobs in cryo-ET data.
starsplitter
Split relion star files by tomogram or Warp directory.
tbl2imod2relion
Subtomogram Averaging using Dynamo, imod, Relion and MatLab
subtomotools
Some scripts to facilitate subtomogram-averaging workflows.
tomotools
Scripts to make cryo-electron tomography a bit easier
bwmr's Repositories
bwmr/mod2mask
Creates binary mask from imod boundary model.
bwmr/napari-segselect
Napari Plugin to clean membrain-seg segmentations
bwmr/tbl2imod2relion
Subtomogram Averaging using Dynamo, imod, Relion and MatLab
bwmr/microbiome_morphology
Code and Data related to Wimmer and Morais et al (2023)
bwmr/orientation-filter
Filter particles by stable orientation across refinements.
bwmr/seg-select
Turn voxel-segmentations to binary based on voxel value
bwmr/sizepicker
Pick blobs in cryo-ET data.
bwmr/starsplitter
Split relion star files by tomogram or Warp directory.
bwmr/vsi2tif
Take Olympus vsi stacks. Bleach-correct, write out ome-tiff. Save clicks.