Pinned Repositories
abf2heatmap
simple parser tool for ePhys .abf data
annotator
batch_correction_scripts
cwl wrapper for seurat batch effect correction package
bfx
bioinformatics scripts
clip_analysis
CLIPSEQ analysis tools
clustering_tools
single cell clustering tools written for cwl workflows
convertTSV
converts TSV files to sparse/dense mtx files and H5 files, or the other way around.
docker
dockerfiles for various envs
junction-counter
counts reads that support excluded exon-intron junctions
singularity
Singularity files, mostly just pulling from docker
byee4's Repositories
byee4/annotator
byee4/bfx
bioinformatics scripts
byee4/clip_analysis
CLIPSEQ analysis tools
byee4/clustering_tools
single cell clustering tools written for cwl workflows
byee4/docker
dockerfiles for various envs
byee4/singularity
Singularity files, mostly just pulling from docker
byee4/abf2heatmap
simple parser tool for ePhys .abf data
byee4/bigwig-plotter
plots bigwig signal
byee4/binder-data
A place to store data for Binder
byee4/bulk_rnaseq_pipeline
RNA SEQ processing pipeline written with CWL
byee4/byee4.github.io
byee4/cellranger
byee4/clipper
A tool to identify CLIP-seq peaks
byee4/cwl-docker-test
test automated build of docker containers with cwl
byee4/cwl-templates
CWL templates for making various tools/workflows in CWL
byee4/cwl-tools
collection of cwl tools
byee4/django-globus-portal-framework
Collate data from Globus Search for easy discovery and transfer
byee4/django-template
Simple, extensible, easy to set up, fully functional, django project template.
byee4/dropseq_cwl
cwl workflow wrapping dropseq tools
byee4/example_pyscript2cwl
Template for writing a python script and wrapping it with CWL
byee4/flair
Full-Length Alternative Isoform analysis of RNA
byee4/fluidigm_cwl
single cell pipeline to process fluidigm data
byee4/MEA
byee4/metadata
repo for handling metadata upload/processing/downloading
byee4/mybinder
byee4/notebooks
Jupyter notebooks for CellProfiler and friends
byee4/QC
parser for eCLIP and RNA-SEQ pipeline summary files
byee4/rcfiles
Collection of rc files for easy portability
byee4/rna-seq-pipeline
byee4/VISION
A high-throughput and unbiased module for interpreting scRNA-seq data.