c-BIG

Beacon-on-GraphQL

This implementation of the Beacon protocol leverages on graphQL to query an ElasticSearch database in which genomic data collections are stored

demo-notebooks

Collection of Zeppelin notebook to serve as demo for Hail usage

gnomad-browser

JavaScript tools for exploring genomic data

Hail-on-AWS

Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.

lambda-chorus-vcf

NPM-sample-qc

reference implementation of GA4GH WGS Quality Control Standards

service-workbench-on-aws

A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.

SG10K-CYP2D6

Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort

sg10k-health

the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) was a "proof-of-concept" phase demonstrating the feasibility of large-scale genomic data generation with linkage to electronic health data. A headline deliverable of NPM Phase I was generating a genomic reference database of 10,000 healthy Singaporeans (SG10K_Health).

wgs-sample-qc

visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results

c-BIG/NPM-sample-qc

reference implementation of GA4GH WGS Quality Control Standards

c-BIG/SG10K-CYP2D6

Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort

c-BIG/sg10k-health

the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) was a "proof-of-concept" phase demonstrating the feasibility of large-scale genomic data generation with linkage to electronic health data. A headline deliverable of NPM Phase I was generating a genomic reference database of 10,000 healthy Singaporeans (SG10K_Health).

c-BIG/wgs-sample-qc

visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results

c-BIG/Hail-on-AWS

Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.

c-BIG/Beacon-on-GraphQL

This implementation of the Beacon protocol leverages on graphQL to query an ElasticSearch database in which genomic data collections are stored

c-BIG/demo-notebooks

Collection of Zeppelin notebook to serve as demo for Hail usage

c-BIG/gnomad-browser

JavaScript tools for exploring genomic data

c-BIG/lambda-chorus-vcf

c-BIG/MultiQC_NPM

A MultiQC plugin for downstream analysis of NPM data

c-BIG/service-workbench-on-aws

A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.

c-BIG/SG10K-lcWGS

lcWGS PRS imputation joint GRIDS-NPM x Nalagenetics project

c-BIG/aws-genomics-datalake

Fork from aws-samples repo: code referenced in the AWS blog post "Build a Genomics data lake on AWS".