/Cell-Confluency-calculator-GUI-Matlab

Undertook an optional project for the course: "Introduction to computers" , taught by Dr Leonidas Alexopoulos , head of Bio engineering department @National Technical University of Athens. Project involved writing matlab commands to calculate the percentage of a lab plate that was covered with cells ( cell confluency). It included: 1. Converting the image to gray scale and applying contrast and object edge corrections. 2. Converting grayscale image to a logical image ( black or white pixels (0 not cell ,1 cell coverage ) through the use of a modular threshold level 3. Calculating the percentage of the pixels with cell coverage over the total pixels. 4. Integrating the above functions into a graphical user interface that allows browsing for appropriate images , modifying the threshold level with the use of slider ( while providing default level as well) displaying the stages of image conversion process and finally displaying the cell confluence percentage. 5. Presenting the algorithm and process functionality in class.

Primary LanguageMatlab

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