The REPAC R/Bioconductor package implements the method described in Imada et al. to test for differential Polyadenylation Usage (DPU).
Get the latest stable R release from
CRAN. Then run the following code:
if (!requireNamespace("devtools", quietly = TRUE)) {
install.packages("devtools")
}
devtools::install_github('eddieimada/REPAC')Below is the citation output from using citation('REPAC') in R. Please
run this yourself to check for any updates on how to cite REPAC.
print(citation('REPAC'), bibtex = TRUE)
#>
#> Imada EL, Wilks C, Langmead B, Marchionni L (2022). "Unleashing
#> alternative polyadenylation analyses with REPAC." _bioRxiv_. <URL:
#> https://www.biorxiv.org/content/10.1101/TODO>.
#>
#> A BibTeX entry for LaTeX users is
#>
#> @Article{,
#> title = {Unleashing alternative polyadenylation analyses with REPAC},
#> author = {Eddie L. Imada and Christopher Wilks and Ben Langmead and Luigi Marchionni},
#> year = {2022},
#> journal = {bioRxiv},
#> url = {https://www.biorxiv.org/content/10.1101/TODO},
#> }