Implementation of a rule based prediction algorithm based on the rulefit algorithm from Friedman and Popescu (PDF)
The algorithm can be used for predicting an output vector y given an input matrix X. In the first step a tree ensemble is generated with gradient boosting. The trees are then used to form rules, where the paths to each node in each tree form one rule. A rule is a binary decision if an observation is in a given node, which is dependent on the input features that were used in the splits. The ensemble of rules together with the original input features are then being input in a L1-regularized linear model, also called Lasso, which estimates the effects of each rule on the output target but at the same time estimating many of those effects to zero.
You can use rulefit for predicting a numeric response (categorial not yet implemented). The input has to be a numpy matrix with only numeric values.
The latest version can be installed from the master branch using pip:
pip install git+git://github.com/christophM/rulefit.git
Another option is to clone the repository and install using python setup.py install or python setup.py develop.
import numpy as np
import pandas as pd
from rulefit import RuleFit
boston_data = pd.read_csv("boston.csv", index_col=0)
y = boston_data.medv.values
X = boston_data.drop("medv", axis=1)
features = X.columns
X = X.as_matrix()
rf = RuleFit()
rf.fit(X, y, feature_names=features)If you want to have influence on the tree generator you can pass the generator as argument:
from sklearn.ensemble import GradientBoostingRegressor
gb = GradientBoostingRegressor(n_estimators=500, max_depth=10, learning_rate=0.01)
rf = RuleFit(gb)
rf.fit(X, y, feature_names=features)rf.predict(X)rules = rf.get_rules()
rules = rules[rules.coef != 0].sort_values("support", ascending=False)
print(rules)- In contrast to the original paper, the generated trees are always fitted with the same maximum depth. In the original implementation the maximum depth of the tree are drawn from a distribution each time
- This implementation is in progress. If you find a bug, don't hesitate to contact me.
All notable changes to this project will be documented here.
- set default of exclude_zero_coef to False in get_rules():
- syntax fix (Issue 21)
- Introduces classification for RuleFit
- Adds scaling of variables (Friedscale)
- Allows random size trees for creating rules
- Start changelog and versions