caherzee

caherzee's Stars

• caherzee/3-proto-lisp

  3-ProtoLisp, a procedural reflective variant of prototypical Lisp.

  Language:Common Lisp1

• ExaScience/elprep-bench

  elPrep reimplementations in C++ and Java, only for benchmark comparisons

  Language:C++103

• ExaScience/elprep

  elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.

  Language:Go28742

• ExaScience/Severo.jl

  a software package for analysis and exploration of single-cell RNA-seq datasets

  Language:Julia32

• ExaScience/ptra

  Patient Trajectory Analysis Library

  Language:Go61

• clojure/clojure

  The Clojure programming language

  Language:Java10.5k1.5k

• valyala/fastrand

  Fast and scalable pseudorandom generator for Go

  Language:Go20015

• biointec/halvade

  Parallel read alignment and variant calling using MapReduce

  Language:Java193

• ExaScience/Severo_jll.jl

  Language:Julia1

• ExaScience/Aki-Predictor

  Language:Python96

• ExaScience/bpmf

  Julia and C++ implementations of Bayesian Probabilistic Matrix Factorization using Markov Chain Monte Carlo

  Language:C++5713

• DylanMeeus/hasgo

  Haskell-flavoured functions for Go :smiley:

  Language:Go14111

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k592

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k557

• pcostanza/mop-features

  This package provides a way to check what CLOS MOP features a Common Lisp implementation supports.

  Language:Common Lisp6

• pcostanza/claws

  CLAWS - Work-stealing scheduler for LispWorks

  Language:Common Lisp112

• ExaScience/smurff

  Bayesian Factorization with Side Information in C++ with Python wrapper

  Language:C++7014

• ExaScience/cl-elprep

  elPrep: a high-performance tool for preparing sequencing alignment/map files in sequencing pipelines (Lisp version)

  Language:Common Lisp142

• ExaScience/pargo

  A library for parallel programming in Go

  Language:Go1857

• marcoheisig/cl-mpi

  MPI bindings for Common Lisp with many useful extras

  Language:Common Lisp668

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k581

• pcostanza/filtered-functions

  Filtered functions provide an extension of CLOS generic function invocation that add a simple preprocessing step before the actual method dispatch is performed and thus enable the use of arbitrary predicates for selecting and applying methods.

  Language:Common Lisp431

• pcostanza/contextl

  ContextL is a CLOS extension for Context-oriented Programming (COP), and was the first language extension that explicitly supports COP when it was originally introduced in 2005.

  Language:Common Lisp473

• pcostanza/closer-mop

  Closer to MOP is a compatibility layer that rectifies many of the absent or incorrect CLOS MOP features across a broad range of Common Lisp implementations.

  Language:Common Lisp15219

• jaak-s/BayesianDataFusion.jl

  Bayesian multi-tensor factorization methods, with side information

  Language:Julia2918

• ddcap/halvade

  New url: https://github.com/biointec/halvade

  Language:Java1910

• yvdriess/precipes

  Parallel Recipes : parallel workflow execution made easy

  Language:C++132