Cai Lab at Texas A&M (cailab-tamu)

HVG

Supporting information for 'Single-cell expression variability implies cell function'

QuantumGRN

Quantum Gene Regulatory Networks with Application to Single-cell Data

QUBO_Feature_Selection

Feature Selection QUBO (Quadratic Unconstrained Binary Optimization)

sciData-LCL

Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'

scTenifoldKnk

R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.

scTenifoldNet

A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data

scTenifoldXct

Manifold learning to detect cell-cell interactions.

scTypeGSEA

SCZ_GE_Dispersion

Single-Cell-Analyses-Course

github site for VIBS-689 Special Topics in Single Cell Analyses

cailab-tamu/scTenifoldKnk

R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.

cailab-tamu/scTenifoldNet

A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data

cailab-tamu/QuantumGRN

Quantum Gene Regulatory Networks with Application to Single-cell Data

cailab-tamu/sciData-LCL

Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'

cailab-tamu/scTypeGSEA

cailab-tamu/scTenifoldXct

Manifold learning to detect cell-cell interactions.

cailab-tamu/HVG

Supporting information for 'Single-cell expression variability implies cell function'

cailab-tamu/Single-Cell-Analyses-Course

github site for VIBS-689 Special Topics in Single Cell Analyses

cailab-tamu/QUBO_Feature_Selection

Feature Selection QUBO (Quadratic Unconstrained Binary Optimization)

cailab-tamu/SCZ_GE_Dispersion

cailab-tamu/blueprint_data

cailab-tamu/covid19-antimalarials-letter

cailab-tamu/metaHVG

cailab-tamu/sm-scTenifoldNet

Support material for "scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data"

cailab-tamu/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

cailab-tamu/cailab-tamu.github.io

cailab-tamu/ConsensusPeaks

Calling Consensus Peaks

cailab-tamu/covid19-malaria-letter

cailab-tamu/ebvMultiOmics

cailab-tamu/GenKI

cailab-tamu/LCL_scRNA-seq

scRNA-seq with LCLs - Three cell line samples sequenced: (1) GM12878, (2) GM18502, and (3) the 1:1 mixture of the two

cailab-tamu/LRSMA

Low-rank Sparse Matrix Approximation for ChIP-Seq Consensus Peak Detection

cailab-tamu/Matlab-GAN

MATLAB implementations of Generative Adversarial Networks -- from GAN to Pixel2Pixel, CycleGAN

cailab-tamu/MATLAB_Kauffman_NK_Random_Boolean_Network

The initial version of this is entirely thanks to the work of Christof Teuscher (http://www.teuscher.ch/christof/ext/), who created the original Matlab Random Boolean Network Toolbox (http://www.teuscher.ch/rbntoolbox/). The only changes made so far are to make the toolbox compatible with r2015a. Refer to the Toolbox site for additional overview and documentation information. This is posted with permission, under a BSD license, with permission from the original author. Additional updates (or notification of features that still don't work - I haven't tested all of them yet) are welcome.

cailab-tamu/mtContent

cailab-tamu/RNA-SeqAnalysis

cailab-tamu/schwannCompilation

cailab-tamu/scInTime

cailab-tamu/SKATr2matlab

cailab-tamu/Spline-DV