/syri

Synteny and Rearrangement Identifier

Primary LanguagePythonMIT LicenseMIT

Pre-requisite:

  1. Python3 and the following packages: Cython, numpy, scipy, pandas, python-igraph, biopython, psutil, and pysam
  2. C/C++ compiler: g++

Installation:

Download/clone the repository, open the folder and run:

python setup.py install

This will install the cython modules.

Running:

Executables will be in syri/bin/ folder and can be run directly from the terminal.

Detailed information is available at: https://schneebergerlab.github.io/syri