- Python3 and the following packages: Cython, numpy, scipy, pandas, python-igraph, biopython, psutil, and pysam
- C/C++ compiler: g++
Download/clone the repository, open the folder and run:
python setup.py install
This will install the cython modules.
Executables will be in syri/bin/
folder and can be run directly from the terminal.
Detailed information is available at: https://schneebergerlab.github.io/syri