calebgeniesse

dyneusr

Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)

neumapper

A scalable Mapper algorithm for neuroimaging data analysis

3d-force-graph

3D force-directed graph component using ThreeJS/WebGL

adversarial-validation

Creating a better validation set when test examples differ from training examples

caffeine-mapper

calebgeniesse.github.io

landmark_cover

A landmark-based cover for KeplerMapper

pcluster

A partial clustering wrapper for Mapper

reciprocal_isomap

A reciprocal variant of Isomap for robust non-linear dimensionality reduction in Python

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

calebgeniesse/caffeine-mapper

calebgeniesse/calebgeniesse.github.io

calebgeniesse/landmark_cover

A landmark-based cover for KeplerMapper

calebgeniesse/pcluster

A partial clustering wrapper for Mapper

calebgeniesse/reciprocal_isomap

A reciprocal variant of Isomap for robust non-linear dimensionality reduction in Python

calebgeniesse/3d-force-graph

3D force-directed graph component using ThreeJS/WebGL

calebgeniesse/AML-days-TDA-tutorial

calebgeniesse/cayman

Cayman is a Jekyll theme for GitHub Pages

calebgeniesse/characterizing-pinns-failure-modes

Characterizing possible failure modes in physics-informed neural networks.

calebgeniesse/Decorated-Merge-Trees

Tools for generating and comparing Decorated Merge Trees, enriched persistence-based topological data descriptors.

calebgeniesse/dnn-mode-connectivity

Mode Connectivity and Fast Geometric Ensembles in PyTorch

calebgeniesse/Generalization_metrics_for_NLP

calebgeniesse/giotto-deep

Deep learning made topological.

calebgeniesse/kepler-mapper

Kepler Mapper: A flexible Python implementation of the Mapper algorithm.

calebgeniesse/kepler-mapper-backend-example

Demonstration of how to use Kepler Mapper as backend.

calebgeniesse/loss_landscape_taxonomy

[NeurIPS 2021] code for "Taxonomizing local versus global structure in neural network loss landscapes" https://arxiv.org/abs/2107.11228

calebgeniesse/mapper_comparison

Code for paper Mapper Comparison with Wasserstein Metrics

calebgeniesse/mmTDA

Code for paper "A topological data analysis based classification method for multiple measurements"

calebgeniesse/modl

Randomized online matrix factorization

calebgeniesse/nilearn

Machine learning for NeuroImaging in Python

calebgeniesse/ohbm2020-posters

Centralized registry of Jitsi rooms for OHBM 2020 posters.

calebgeniesse/openTSNE

Extensible, parallel implementations of t-SNE

calebgeniesse/pytorch_cluster

PyTorch Extension Library of Optimized Graph Cluster Algorithms

calebgeniesse/pytorch_geometric

Geometric Deep Learning Extension Library for PyTorch

calebgeniesse/sparse_attention

Examples of using sparse attention, as in "Generating Long Sequences with Sparse Transformers"

calebgeniesse/SuperBench

calebgeniesse/TopologyLayer

A Topology Layer for Machine Learning : Persistent Homology + Features for PyTorch

calebgeniesse/umap-js

JavaScript implementation of UMAP

calebgeniesse/understanding-umap

Understanding the theory behind UMAP

calebgeniesse/WeightWatcher

The WeightWatcher tool for predicting the accuracy of Deep Neural Networks