callum-jpg

Pinned Repositories

albumentations_3d
Paired augmentations (image, mask, weight map) for 3D multichannel images
Language:Python00
bioimage_datasets
Links to where you can download bioimage datasets
0 1 00
CellProfiler
An open-source application for biological image analysis
Language:Python00
CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
Language:Python0 0 00
Deep_QIBC
Language:Python00
Distributed-Collate
Application for running pycytominer's collate function in parallel on AWS
Language:Python00
qibcPlot
R Scripts for QIBC analysis of microscopy images
Language:R00
albumentations_3d
Paired augmentations (image, mask, weight map) for 3D multichannel images
Language:Python1 1 01
UNet_3D_C_elegans
3D segmentation of the C. elegans germ line
Language:Jupyter Notebook1 1 02
jump-scope-analysis
Language:Jupyter Notebook0 9 30

callum-jpg's Repositories

callum-jpg/albumentations_3d
Paired augmentations (image, mask, weight map) for 3D multichannel images
Language:Python00
callum-jpg/bioimage_datasets
Links to where you can download bioimage datasets
0 1 00
callum-jpg/CellProfiler
An open-source application for biological image analysis
Language:Python00
callum-jpg/CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
Language:Python0 0 00
callum-jpg/Deep_QIBC
Language:Python00
callum-jpg/Distributed-Collate
Application for running pycytominer's collate function in parallel on AWS
Language:Python00
callum-jpg/qibcPlot
R Scripts for QIBC analysis of microscopy images
Language:R00
callum-jpg/gbif_downloader
Language:Jupyter Notebook
callum-jpg/histology_features
Language:Jupyter Notebook
callum-jpg/imageJMacros
Language:ImageJ Macro
callum-jpg/MetamorphSort
Language:Python
callum-jpg/motifSearch
Find the occurrence of a specific motif in a genome
Language:Python
callum-jpg/profiling-handbook
Image-based Profiling Handbook
Language:R
callum-jpg/profiling-recipe
Image-based Profiling Recipe
callum-jpg/pycytominer
cytominer python package
Language:Python
callum-jpg/pycytominer-Docker
Language:Dockerfile
callum-jpg/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
Language:Jupyter Notebook
callum-jpg/qibcPlot-shiny
Language:R
callum-jpg/qibcPlot-web
Shiny app demo for the exploration of quantative imaging data
Language:R2 0
callum-jpg/spatialdata-io
callum-jpg/splinedist
SplineDist: Automated Cell Segmentation with Spline Curves
Language:Jupyter Notebook0 0
callum-jpg/tutorials
CellProfiler tutorial pipelines and images
callum-jpg/UNet_3D_C_elegans
3D segmentation of the C. elegans germ line