/miso-docs-oicr

OICR documentation for MISO

Primary LanguageRubyMIT LicenseMIT

MISO OICR Documentation and workshop

Home of the training documents for the miso-lims laboratory information management system for the Ontario Institute for Cancer Research (OICR).

This tutorial leads users through the steps required to enter data in MISO. Users may complete all sections of the tutorial, or just the sections which apply to their lab tasks.

To configure this document for your own MISO training, first fork this repo. (You could rename it if you don't want -oicr in the repo title)

Then, update the _config.yml file:

  • miso_url: add the URL to your MISO training instance
  • miso_flavour: change to default to use the MISO defaults. Only keep it as OICR if you are using OICR's sample hierarchy and naming conventions.
  • sequencer: change to the name of an active sequencer in your MISO instance.
  • platform: the name of the platform of the selected sequencer
  • seq_params: the name of a sequencing parameters value associated with the selected sequencer
  • miso_admin: the MISO administrator at your site. Could be a team or an individual.
  • miso_admin_contact: the preferred way to contact the MISO administrator at your site.

Finally, deploy the tutorial to GitHub Pages or elsewhere.