campbio/musicatk

SBS192 Create Table Inconsistencies

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There is currently no way to overwrite "SBS192" tables as annotate_transript_strand does not take an overwrite parameter and build_standard_table fails trying to create an "SBS192" table.

This fails:

data(musica)
annotate_transcript_strand(musica, "19", build_table = F)
build_standard_table(musica, genome,
                         table_name = "SBS192", 
                         strand_type = "Transcript_Strand")

The following succeeds in creating a table but cannot be overwritten:

data(musica)
annotate_transcript_strand(musica, "19", build_table = T)

I can no longer reproduce this issue