campbio/musicatk

Issues

• Is It Possible To Have Connections Between Samples in UMAPs

  #58 opened a year ago by kevlumbus
  2

• No colors in DBS plot from compare_cosmic_v3()

  #53 opened 2 years ago by kgeyer
  0

• musicatk::create_musica() from a data frame leads to only NN as variant alleles

  #52 opened 2 years ago by ThomasGro
  4

• Is there any way to get evidence that a DBS is actually 2 SBS? What are the relative rates?

  #51 opened 3 years ago by achevali
  3

• Is there any way to get evidence that a DBS is actually 2 SBS? What are the relative rates?

  #49 opened 3 years ago by achevali
  0

• subset_variants_by_samples should use %in% instead of ==

  #48 opened 3 years ago by achevali
  0

• Encoding issue in plot_ functions

  #41 opened 3 years ago by Acare
  1

• Signature Etiology Lookup Table

  #47 opened 3 years ago by achevali
  1

• Add per-variant signature probability

  #19 opened 3 years ago by achevali
  1

• Combine dbs in create_musica ends up combining Indels

  #28 opened 3 years ago by achevali
  1

• Calculate signature probability for each individual variant

  #18 opened 3 years ago by joshua-d-campbell
  1

• Properly sort umap signature name order

  #23 opened 3 years ago by achevali
  1

• Simple File Format

  #38 opened 3 years ago by nathansahelijo
  0

• SBS192 Create Table Inconsistencies

  #35 opened 3 years ago by nathansahelijo
  1

• Overwrite Table Not Working Correctly

  #32 opened 3 years ago by nathansahelijo
  3

• Cluster exposure warns of non-convergence

  #34 opened 3 years ago by achevali
  0

• Issue plotting cluster in umap

  #30 opened 3 years ago by achevali
  0

• Parallel Process prediction/discovery gridding

  #26 opened 4 years ago by achevali
  0

• Upgrade indel plotting

  #25 opened 4 years ago by achevali
  0

• Message when using non-standard table names

  #17 opened 4 years ago by joshua-d-campbell
  0

• Some miscalculations in indel table construction

  #9 opened 4 years ago by achevali
  0

• Currently removing compound INDELs, need to find a way to include/categorize them

  #7 opened 4 years ago by achevali
  0