joshua-d-campbell

bulk-rna-seq-pipeline

CEL-Seq

Methods for processing single cell data generated from the CEL-seq protocol

celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

coMut

devel_example

Used to illustrate the principles of the software development cycle in R

DevelExample

A basic R package to demonstrate a cycle of code development

DNA_Seq

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

nf-GATK_Exome_Preprocess

Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data

nf-RNA_Seq_Preprocess

joshua-d-campbell/nf-GATK_Exome_Preprocess

Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data

joshua-d-campbell/nf-RNA_Seq_Preprocess

joshua-d-campbell/DNA_Seq

joshua-d-campbell/bulk-rna-seq-pipeline

joshua-d-campbell/CEL-Seq

Methods for processing single cell data generated from the CEL-seq protocol

joshua-d-campbell/celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

joshua-d-campbell/coMut

joshua-d-campbell/devel_example

Used to illustrate the principles of the software development cycle in R

joshua-d-campbell/DevelExample

A basic R package to demonstrate a cycle of code development

joshua-d-campbell/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

joshua-d-campbell/harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

joshua-d-campbell/hello-world

Just another repository

joshua-d-campbell/liger

R package for integrating and analyzing multiple single-cell datasets

joshua-d-campbell/modes

:exclamation: This is a read-only mirror of the CRAN R package repository. modes — Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets. Homepage: http://www.sdeevi.com/modes_package https://github.com/sathish-deevi/modes-Package/

joshua-d-campbell/rmams

R package for Matrix and Analysis Metadata Standards

joshua-d-campbell/SCtools

joshua-d-campbell/shiny-directory-input

An shiny input widget for selecting directories

joshua-d-campbell/singleCellTK

Interactively Analyze scRNA-Seq Data

joshua-d-campbell/utilities

Assortment of code to perform various data processing and analysis tasks.