/Deep-Learning-for-Pathology-Image-Analysis

Framework for Pathology Image Operations / Convolutional Neural Nets for Pathology

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PathoImage

Framework for Pathology Image Operations with Deep Learning.

digiPath module includes whole slide image processing operations. -completed

Please see PLAYGROUND_IMAGES.ipynb and Patch_Sampling.ipynb notebooks to see a selection of operations.

deepnets module includes the functionality of finetuning previously trained convnets on breast histopathology images. Alexnet and VGGnets are supported. -ongoing

Supported operations include:

  • training convnets from scratch on breast histopathology images.
  • finetuning on patches of consensus ROIs of expert pathologists in histopathology images with 2, 4 or 14 class diagnostic labels associated by the pathologists.
  • extracting convolutional feature representations of small patches of pathology images from a finetuned convnet.