cannin/gsoc_2023_cellminercdb_networks

Issues

• Do not use means if Cell Line selected

  #65 opened a year ago by cannin
  1

• Change Values Shown Above Figure

  #62 opened a year ago by cannin
  1

• Add Documentation for Adding Pathways from Pathway Mapper to the Builtin Pathway List

  #50 opened a year ago by cannin
  4

• Select Default Values for Initial State

  #61 opened a year ago by cannin
  1

• Add to Documentation Induces and Represses

  #60 opened a year ago by cannin
  1

• Add Help Section

  #41 opened a year ago by cannin
  1

• Match Process Styling with Pathway Mapper

  #59 opened a year ago by cannin
  1

• Describe Exacting Matching of Identifiers in Documentation

  #64 opened a year ago by cannin
  1

• What is multilevel warning is reported by fgsea?

  #63 opened a year ago by cannin
  1

• Add GSEA

  #46 opened a year ago by cannin
  7

• Make a Legend for the Network Symbols

  #40 opened a year ago by cannin
  1

• Add Symbol Legend to Documentation

  #58 opened a year ago by cannin
  1

• Add Code to Convert Single Pathway to Correct Format

  #52 opened a year ago by cannin
  6

• Redo Add Data Sources from Config File

  #43 opened a year ago by cannin
  1

• Fix Grey Comparent

  #48 opened a year ago by cannin
  1

• Save the network with grey nodes to a JSON file

  #54 opened a year ago by cannin
  3

• Use gray95 for background color

  #55 opened a year ago by cannin
  4

• Remove the Ability to Select Nodes that are Not Genes

  #42 opened a year ago by cannin
  1

• Make new pathways.json

  #53 opened a year ago by cannin
  3

• Black Arrow Bug

  #57 opened a year ago by cannin
  1

• Fix styling (linting) issues with the code

  #36 opened a year ago by cannin
  1

• Rename files in fork

  #38 opened a year ago by cannin
  1

• Use "Tee" Interaction for Red Inhibitory Interactions

  #56 opened a year ago by cannin
  1

• Change Menu Labels

  #49 opened a year ago by cannin
  1

• Remove Datasets from Config

  #47 opened a year ago by cannin
  1

• Import Pathways from KEGG

  #51 opened a year ago by cannin
  0

• Reverse Colors for High Expressed Genes

  #44 opened a year ago by cannin
  1

• Switch from "exp" to "xsq" data used

  #45 opened a year ago by cannin
  1

• Commit Existing Shiny App Demo Code to CellMinerCDB Fork

  #35 opened a year ago by cannin
  3

• In CellMinerCDB Remove Pathways not in PanCanAtlas

  #37 opened a year ago by cannin
  1

• Begin Integrating the Demo Code with the CDB Application as a Module

  #20 opened a year ago by cannin
  1

• Move Upload Pathway to a Conditional Menu

  #33 opened a year ago by cannin
  1

• Allow the upper and lower thresholds for colors to be set by user

  #24 opened a year ago by cannin
  3

• Fix the Table in CDB App

  #39 opened a year ago by cannin
  1

• Add the CCLE Dataset to the Project

  #34 opened a year ago by cannin
  2

• Make a Demo Pathway with All PathwayMapper Symbols

  #32 opened a year ago by cannin
  4

• Make the "Complex" Shape

  #29 opened a year ago by cannin
  1

• Show a Color Bar

  #26 opened a year ago by cannin
  3

• Change Table Output to Reflect 1 Cell Line or Many Samples (by Tissue)

  #31 opened a year ago by cannin
  1

• Change "Options" to "Select Cell Line or Tissue"

  #30 opened a year ago by cannin
  1

• Make option to select by cell line or tissue

  #22 opened a year ago by cannin
  3

• Background color of compound nodes

  #28 opened a year ago by sidd-2203
  1

• Simplify Demo for Users by Only Showing the TCGA Pancancer Networks

  #23 opened a year ago by cannin
  2

• COADREAD WNT Pathway Complexes (Gene Groups) Error Matching Colors

  #18 opened a year ago by cannin
  1

• Change Interaction Colors

  #27 opened 2 years ago by cannin
  3

• Make a Google Slides Presentation for Current Progress

  #19 opened 2 years ago by cannin
  1

• Add median column to data table

  #21 opened 2 years ago by cannin
  1

• Change Green Minimum Color to Blue

  #25 opened 2 years ago by cannin
  1

• Add Arrows to Edges (Interactions)

  #16 opened 2 years ago by cannin
  1

• Fix Select Node Feature

  #17 opened 2 years ago by cannin
  1