Unable to install with pip
Closed this issue · 2 comments
yuanwxu commented
`
(scconfluence) C:\Users\yuanw>pip install scconfluence
Collecting scconfluence
Using cached scconfluence-0.1.1-py3-none-any.whl.metadata (5.2 kB)
Collecting furo<2023.0.0,>=2022.12.7 (from furo[docsbuild]<2023.0.0,>=2022.12.7->scconfluence)
Using cached furo-2022.12.7-py3-none-any.whl.metadata (6.0 kB)
Collecting geomloss<0.3,>=0.2 (from scconfluence)
Using cached geomloss-0.2.6.tar.gz (26 kB)
Preparing metadata (setup.py) ... done
Collecting louvain<0.9.0,>=0.8.2 (from scconfluence)
Using cached louvain-0.8.2-cp310-cp310-win_amd64.whl.metadata (1.5 kB)
Collecting mudata<0.3.0,>=0.2.1 (from scconfluence)
Using cached mudata-0.2.4-py3-none-any.whl.metadata (5.6 kB)
Collecting muon<0.2.0,>=0.1.0 (from scconfluence)
Using cached muon-0.1.7-py3-none-any.whl.metadata (7.2 kB)
Collecting nbsphinx<0.9.0,>=0.8.12 (from nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence)
Using cached nbsphinx-0.8.12-py3-none-any.whl.metadata (2.1 kB)
Requirement already satisfied: numpy<2.0.0,>=1.26.4 in c:\users\yuanw\anaconda3\envs\scconfluence\lib\site-packages (from scconfluence) (1.26.4)
Collecting pot<0.10.0,>=0.9.1 (from scconfluence)
Using cached POT-0.9.5-cp310-cp310-win_amd64.whl.metadata (35 kB)
Collecting pytorch-lightning<3.0.0,>=2.0.0 (from scconfluence)
Using cached pytorch_lightning-2.4.0-py3-none-any.whl.metadata (21 kB)
Collecting scanpy<2.0.0,>=1.0.0 (from scconfluence)
Using cached scanpy-1.10.4-py3-none-any.whl.metadata (9.3 kB)
Collecting scikit-misc<0.2.0,>=0.1.4 (from scconfluence)
Using cached scikit-misc-0.1.4.tar.gz (852 kB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [55 lines of output]
Traceback (most recent call last):
File "C:\Users\yuanw\anaconda3\envs\scconfluence\lib\site-packages\numpy\core_init_.py", line 24, in
from . import multiarray
File "C:\Users\yuanw\anaconda3\envs\scconfluence\lib\site-packages\numpy\core\multiarray.py", line 10, in
from . import overrides
File "C:\Users\yuanw\anaconda3\envs\scconfluence\lib\site-packages\numpy\core\overrides.py", line 8, in
from numpy.core._multiarray_umath import (
ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\yuanw\anaconda3\envs\scconfluence\lib\site-packages\numpy\__init__.py", line 144, in <module>
from numpy.__config__ import show as show_config
File "C:\Users\yuanw\anaconda3\envs\scconfluence\lib\site-packages\numpy\__config__.py", line 4, in <module>
from numpy.core._multiarray_umath import (
File "C:\Users\yuanw\anaconda3\envs\scconfluence\lib\site-packages\numpy\core\__init__.py", line 50, in <module>
raise ImportError(msg)
ImportError:
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy C-extensions failed. This error can happen for
many reasons, often due to issues with your setup or how NumPy was
installed.
We have compiled some common reasons and troubleshooting tips at:
https://numpy.org/devdocs/user/troubleshooting-importerror.html
Please note and check the following:
* The Python version is: Python3.10 from "C:\Users\yuanw\anaconda3\envs\scconfluence\python.exe"
* The NumPy version is: "1.26.4"
and make sure that they are the versions you expect.
Please carefully study the documentation linked above for further help.
Original error was: No module named 'numpy.core._multiarray_umath'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "C:\Users\yuanw\AppData\Local\Temp\pip-install-6lgpxkcu\scikit-misc_8340ee2809e84fd3a629d8d0f2f88251\setup.py", line 170, in <module>
setup_package()
File "C:\Users\yuanw\AppData\Local\Temp\pip-install-6lgpxkcu\scikit-misc_8340ee2809e84fd3a629d8d0f2f88251\setup.py", line 144, in setup_package
from numpy.distutils.core import setup, numpy_cmdclass
File "C:\Users\yuanw\anaconda3\envs\scconfluence\lib\site-packages\numpy\__init__.py", line 149, in <module>
raise ImportError(msg) from e
ImportError: Error importing numpy: you should not try to import numpy from
its source directory; please exit the numpy source tree, and relaunch
your python interpreter from there.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
`
jules-samaran commented
Hi, thanks for using our package and raising this issue.
I haven't been able to replicate it, for me the following instructions work without errors:
conda create -n test_issue python=3.10
conda activate test_issue
pip install scconfluence
Click here to see details of the output of `pip install scconfluence`
``` Collecting scconfluence Downloading scconfluence-0.1.1-py3-none-any.whl.metadata (5.2 kB) Collecting furo<2023.0.0,>=2022.12.7 (from furo[docsbuild]<2023.0.0,>=2022.12.7->scconfluence) Downloading furo-2022.12.7-py3-none-any.whl.metadata (6.0 kB) Collecting geomloss<0.3,>=0.2 (from scconfluence) Using cached geomloss-0.2.6-py3-none-any.whl Collecting louvain<0.9.0,>=0.8.2 (from scconfluence) Downloading louvain-0.8.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (1.5 kB) Collecting mudata<0.3.0,>=0.2.1 (from scconfluence) Using cached mudata-0.2.4-py3-none-any.whl.metadata (5.6 kB) Collecting muon<0.2.0,>=0.1.0 (from scconfluence) Downloading muon-0.1.7-py3-none-any.whl.metadata (7.2 kB) Collecting nbsphinx<0.9.0,>=0.8.12 (from nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Downloading nbsphinx-0.8.12-py3-none-any.whl.metadata (2.1 kB) Collecting numpy<2.0.0,>=1.26.4 (from scconfluence) Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB) Collecting pot<0.10.0,>=0.9.1 (from scconfluence) Downloading POT-0.9.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (34 kB) Collecting pytorch-lightning<3.0.0,>=2.0.0 (from scconfluence) Downloading pytorch_lightning-2.4.0-py3-none-any.whl.metadata (21 kB) Collecting scanpy<2.0.0,>=1.0.0 (from scconfluence) Downloading scanpy-1.10.4-py3-none-any.whl.metadata (9.3 kB) Requirement already satisfied: scikit-misc<0.2.0,>=0.1.4 in /Users/jsamaran/.local/lib/python3.10/site-packages (from scconfluence) (0.1.4) Collecting tensorboard<3.0.0,>=2.12.0 (from scconfluence) Downloading tensorboard-2.18.0-py3-none-any.whl.metadata (1.6 kB) Collecting torch<3.0.0,>=2.0.0 (from scconfluence) Downloading torch-2.5.1-cp310-none-macosx_11_0_arm64.whl.metadata (28 kB) Collecting beautifulsoup4 (from furo<2023.0.0,>=2022.12.7->furo[docsbuild]<2023.0.0,>=2022.12.7->scconfluence) Using cached beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB) Collecting sphinx<7.0,>=5.0 (from furo<2023.0.0,>=2022.12.7->furo[docsbuild]<2023.0.0,>=2022.12.7->scconfluence) Downloading sphinx-6.2.1-py3-none-any.whl.metadata (6.2 kB) Collecting sphinx-basic-ng (from furo<2023.0.0,>=2022.12.7->furo[docsbuild]<2023.0.0,>=2022.12.7->scconfluence) Using cached sphinx_basic_ng-1.0.0b2-py3-none-any.whl.metadata (1.5 kB) Collecting pygments>=2.7 (from furo<2023.0.0,>=2022.12.7->furo[docsbuild]<2023.0.0,>=2022.12.7->scconfluence) Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB) WARNING: furo 2022.12.7 does not provide the extra 'docsbuild' Collecting igraph<0.12,>=0.10.0 (from louvain<0.9.0,>=0.8.2->scconfluence) Downloading igraph-0.11.8-cp39-abi3-macosx_11_0_arm64.whl.metadata (3.8 kB) Collecting pandas (from mudata<0.3.0,>=0.2.1->scconfluence) Using cached pandas-2.2.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (89 kB) Collecting h5py (from mudata<0.3.0,>=0.2.1->scconfluence) Using cached h5py-3.12.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.5 kB) Collecting anndata>=0.10.8 (from mudata<0.3.0,>=0.2.1->scconfluence) Downloading anndata-0.11.1-py3-none-any.whl.metadata (8.2 kB) Collecting matplotlib (from muon<0.2.0,>=0.1.0->scconfluence) Using cached matplotlib-3.9.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (11 kB) Collecting seaborn (from muon<0.2.0,>=0.1.0->scconfluence) Using cached seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) Collecting scikit-learn (from muon<0.2.0,>=0.1.0->scconfluence) Using cached scikit_learn-1.5.2-cp310-cp310-macosx_12_0_arm64.whl.metadata (13 kB) Collecting umap-learn (from muon<0.2.0,>=0.1.0->scconfluence) Using cached umap_learn-0.5.7-py3-none-any.whl.metadata (21 kB) Collecting numba (from muon<0.2.0,>=0.1.0->scconfluence) Using cached numba-0.60.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.7 kB) Collecting protobuf (from muon<0.2.0,>=0.1.0->scconfluence) Using cached protobuf-5.28.3-cp38-abi3-macosx_10_9_universal2.whl.metadata (592 bytes) Collecting tqdm (from muon<0.2.0,>=0.1.0->scconfluence) Downloading tqdm-4.67.0-py3-none-any.whl.metadata (57 kB) Collecting docutils (from nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Downloading docutils-0.21.2-py3-none-any.whl.metadata (2.8 kB) Collecting jinja2 (from nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Downloading jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) Collecting nbconvert!=5.4 (from nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB) Collecting traitlets>=5 (from nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB) Collecting nbformat (from nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Using cached nbformat-5.10.4-py3-none-any.whl.metadata (3.6 kB) WARNING: nbsphinx 0.8.12 does not provide the extra 'docsbuild' Collecting scipy>=1.6 (from pot<0.10.0,>=0.9.1->scconfluence) Using cached scipy-1.14.1-cp310-cp310-macosx_12_0_arm64.whl.metadata (60 kB) Collecting PyYAML>=5.4 (from pytorch-lightning<3.0.0,>=2.0.0->scconfluence) Downloading PyYAML-6.0.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB) Collecting fsspec>=2022.5.0 (from fsspec[http]>=2022.5.0->pytorch-lightning<3.0.0,>=2.0.0->scconfluence) Downloading fsspec-2024.10.0-py3-none-any.whl.metadata (11 kB) Collecting torchmetrics>=0.7.0 (from pytorch-lightning<3.0.0,>=2.0.0->scconfluence) Downloading torchmetrics-1.6.0-py3-none-any.whl.metadata (20 kB) Collecting packaging>=20.0 (from pytorch-lightning<3.0.0,>=2.0.0->scconfluence) Downloading packaging-24.2-py3-none-any.whl.metadata (3.2 kB) Collecting typing-extensions>=4.4.0 (from pytorch-lightning<3.0.0,>=2.0.0->scconfluence) Downloading typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) Collecting lightning-utilities>=0.10.0 (from pytorch-lightning<3.0.0,>=2.0.0->scconfluence) Downloading lightning_utilities-0.11.8-py3-none-any.whl.metadata (5.2 kB) Collecting joblib (from scanpy<2.0.0,>=1.0.0->scconfluence) Using cached joblib-1.4.2-py3-none-any.whl.metadata (5.4 kB) Collecting legacy-api-wrap>=1.4 (from scanpy<2.0.0,>=1.0.0->scconfluence) Using cached legacy_api_wrap-1.4-py3-none-any.whl.metadata (1.8 kB) Collecting natsort (from scanpy<2.0.0,>=1.0.0->scconfluence) Using cached natsort-8.4.0-py3-none-any.whl.metadata (21 kB) Collecting networkx>=2.7 (from scanpy<2.0.0,>=1.0.0->scconfluence) Using cached networkx-3.4.2-py3-none-any.whl.metadata (6.3 kB) Collecting patsy!=1.0.0 (from scanpy<2.0.0,>=1.0.0->scconfluence) Downloading patsy-1.0.1-py2.py3-none-any.whl.metadata (3.3 kB) Collecting pynndescent>=0.5 (from scanpy<2.0.0,>=1.0.0->scconfluence) Using cached pynndescent-0.5.13-py3-none-any.whl.metadata (6.8 kB) Collecting session-info (from scanpy<2.0.0,>=1.0.0->scconfluence) Using cached session_info-1.0.0-py3-none-any.whl Collecting statsmodels>=0.13 (from scanpy<2.0.0,>=1.0.0->scconfluence) Using cached statsmodels-0.14.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB) Collecting absl-py>=0.4 (from tensorboard<3.0.0,>=2.12.0->scconfluence) Using cached absl_py-2.1.0-py3-none-any.whl.metadata (2.3 kB) Collecting grpcio>=1.48.2 (from tensorboard<3.0.0,>=2.12.0->scconfluence) Downloading grpcio-1.68.0-cp310-cp310-macosx_12_0_universal2.whl.metadata (3.9 kB) Collecting markdown>=2.6.8 (from tensorboard<3.0.0,>=2.12.0->scconfluence) Downloading Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) Requirement already satisfied: setuptools>=41.0.0 in /Users/jsamaran/miniconda3/envs/test_issue/lib/python3.10/site-packages (from tensorboard<3.0.0,>=2.12.0->scconfluence) (75.5.0) Collecting six>1.9 (from tensorboard<3.0.0,>=2.12.0->scconfluence) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting tensorboard-data-server<0.8.0,>=0.7.0 (from tensorboard<3.0.0,>=2.12.0->scconfluence) Using cached tensorboard_data_server-0.7.2-py3-none-any.whl.metadata (1.1 kB) Collecting werkzeug>=1.0.1 (from tensorboard<3.0.0,>=2.12.0->scconfluence) Downloading werkzeug-3.1.3-py3-none-any.whl.metadata (3.7 kB) Collecting filelock (from torch<3.0.0,>=2.0.0->scconfluence) Downloading filelock-3.16.1-py3-none-any.whl.metadata (2.9 kB) Collecting sympy==1.13.1 (from torch<3.0.0,>=2.0.0->scconfluence) Downloading sympy-1.13.1-py3-none-any.whl.metadata (12 kB) Collecting mpmath<1.4,>=1.1.0 (from sympy==1.13.1->torch<3.0.0,>=2.0.0->scconfluence) Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB) Collecting array-api-compat!=1.5,>1.4 (from anndata>=0.10.8->mudata<0.3.0,>=0.2.1->scconfluence) Downloading array_api_compat-1.9.1-py3-none-any.whl.metadata (1.6 kB) Collecting exceptiongroup (from anndata>=0.10.8->mudata<0.3.0,>=0.2.1->scconfluence) Using cached exceptiongroup-1.2.2-py3-none-any.whl.metadata (6.6 kB) Collecting aiohttp!=4.0.0a0,!=4.0.0a1 (from fsspec[http]>=2022.5.0->pytorch-lightning<3.0.0,>=2.0.0->scconfluence) Downloading aiohttp-3.11.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (7.7 kB) Collecting texttable>=1.6.2 (from igraph<0.12,>=0.10.0->louvain<0.9.0,>=0.8.2->scconfluence) Using cached texttable-1.7.0-py2.py3-none-any.whl.metadata (9.8 kB) Collecting contourpy>=1.0.1 (from matplotlib->muon<0.2.0,>=0.1.0->scconfluence) Downloading contourpy-1.3.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.4 kB) Collecting cycler>=0.10 (from matplotlib->muon<0.2.0,>=0.1.0->scconfluence) Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib->muon<0.2.0,>=0.1.0->scconfluence) Downloading fonttools-4.55.0-cp310-cp310-macosx_10_9_universal2.whl.metadata (164 kB) Collecting kiwisolver>=1.3.1 (from matplotlib->muon<0.2.0,>=0.1.0->scconfluence) Using cached kiwisolver-1.4.7-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.3 kB) Collecting pillow>=8 (from matplotlib->muon<0.2.0,>=0.1.0->scconfluence) Using cached pillow-11.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.1 kB) Collecting pyparsing>=2.3.1 (from matplotlib->muon<0.2.0,>=0.1.0->scconfluence) Using cached pyparsing-3.2.0-py3-none-any.whl.metadata (5.0 kB) Collecting python-dateutil>=2.7 (from matplotlib->muon<0.2.0,>=0.1.0->scconfluence) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting bleach!=5.0.0 (from nbconvert!=5.4->nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Downloading bleach-6.2.0-py3-none-any.whl.metadata (30 kB) Collecting defusedxml (from nbconvert!=5.4->nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Using cached defusedxml-0.7.1-py2.py3-none-any.whl.metadata (32 kB) Collecting jupyter-core>=4.7 (from nbconvert!=5.4->nbsphinx<0.9.0,>=0.8.12->nbsphinx[docsbuild]<0.9.0,>=0.8.12->scconfluence) Using cached jupyter_core-5.7.2-py3-none-any.whl.metadata (3.4 kB) 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async_timeout-5.0.1-py3-none-any.whl (6.2 kB) Using cached attrs-24.2.0-py3-none-any.whl (63 kB) Downloading certifi-2024.8.30-py3-none-any.whl (167 kB) Downloading charset_normalizer-3.4.0-cp310-cp310-macosx_11_0_arm64.whl (120 kB) Downloading frozenlist-1.5.0-cp310-cp310-macosx_11_0_arm64.whl (52 kB) Downloading idna-3.10-py3-none-any.whl (70 kB) Using cached jsonschema_specifications-2024.10.1-py3-none-any.whl (18 kB) Using cached jupyter_client-8.6.3-py3-none-any.whl (106 kB) Downloading multidict-6.1.0-cp310-cp310-macosx_11_0_arm64.whl (29 kB) Downloading platformdirs-4.3.6-py3-none-any.whl (18 kB) Downloading propcache-0.2.0-cp310-cp310-macosx_11_0_arm64.whl (45 kB) Using cached referencing-0.35.1-py3-none-any.whl (26 kB) Downloading rpds_py-0.21.0-cp310-cp310-macosx_11_0_arm64.whl (318 kB) Downloading urllib3-2.2.3-py3-none-any.whl (126 kB) Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Downloading yarl-1.17.2-cp310-cp310-macosx_11_0_arm64.whl (91 kB) Downloading pyzmq-26.2.0-cp310-cp310-macosx_10_15_universal2.whl (1.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 45.2 MB/s eta 0:00:00 Using cached tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl (435 kB) Installing collected packages: webencodings, texttable, snowballstemmer, pytz, mpmath, fastjsonschema, urllib3, tzdata, typing-extensions, traitlets, tqdm, tornado, tinycss2, threadpoolctl, tensorboard-data-server, sympy, stdlib-list, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, six, rpds-py, pyzmq, PyYAML, pyparsing, pygments, protobuf, propcache, platformdirs, pillow, pandocfilters, packaging, numpy, networkx, natsort, mistune, markupsafe, markdown, llvmlite, legacy-api-wrap, kiwisolver, jupyterlab-pygments, joblib, imagesize, igraph, idna, grpcio, fsspec, frozenlist, fonttools, filelock, exceptiongroup, docutils, defusedxml, cycler, charset-normalizer, certifi, bleach, babel, attrs, async-timeout, array-api-compat, alabaster, aiohappyeyeballs, absl-py, werkzeug, session-info, scipy, requests, referencing, python-dateutil, patsy, numba, multidict, louvain, lightning-utilities, jupyter-core, jinja2, h5py, contourpy, beautifulsoup4, aiosignal, yarl, torch, tensorboard, sphinx, scikit-learn, pot, pandas, matplotlib, jupyter-client, jsonschema-specifications, torchmetrics, statsmodels, sphinx-basic-ng, seaborn, pynndescent, jsonschema, geomloss, anndata, aiohttp, umap-learn, nbformat, mudata, furo, scanpy, pytorch-lightning, nbclient, nbconvert, muon, nbsphinx, scconfluence Successfully installed PyYAML-6.0.2 absl-py-2.1.0 aiohappyeyeballs-2.4.3 aiohttp-3.11.2 aiosignal-1.3.1 alabaster-0.7.16 anndata-0.11.1 array-api-compat-1.9.1 async-timeout-5.0.1 attrs-24.2.0 babel-2.16.0 beautifulsoup4-4.12.3 bleach-6.2.0 certifi-2024.8.30 charset-normalizer-3.4.0 contourpy-1.3.1 cycler-0.12.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.2 fastjsonschema-2.20.0 filelock-3.16.1 fonttools-4.55.0 frozenlist-1.5.0 fsspec-2024.10.0 furo-2022.12.7 geomloss-0.2.6 grpcio-1.68.0 h5py-3.12.1 idna-3.10 igraph-0.11.8 imagesize-1.4.1 jinja2-3.1.4 joblib-1.4.2 jsonschema-4.23.0 jsonschema-specifications-2024.10.1 jupyter-client-8.6.3 jupyter-core-5.7.2 jupyterlab-pygments-0.3.0 kiwisolver-1.4.7 legacy-api-wrap-1.4 lightning-utilities-0.11.8 llvmlite-0.43.0 louvain-0.8.2 markdown-3.7 markupsafe-3.0.2 matplotlib-3.9.2 mistune-3.0.2 mpmath-1.3.0 mudata-0.2.4 multidict-6.1.0 muon-0.1.7 natsort-8.4.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.8.12 networkx-3.4.2 numba-0.60.0 numpy-1.26.4 packaging-24.2 pandas-2.2.3 pandocfilters-1.5.1 patsy-1.0.1 pillow-11.0.0 platformdirs-4.3.6 pot-0.9.5 propcache-0.2.0 protobuf-5.28.3 pygments-2.18.0 pynndescent-0.5.13 pyparsing-3.2.0 python-dateutil-2.9.0.post0 pytorch-lightning-2.4.0 pytz-2024.2 pyzmq-26.2.0 referencing-0.35.1 requests-2.32.3 rpds-py-0.21.0 scanpy-1.10.4 scconfluence-0.1.1 scikit-learn-1.5.2 scipy-1.14.1 seaborn-0.13.2 session-info-1.0.0 six-1.16.0 snowballstemmer-2.2.0 soupsieve-2.6 sphinx-6.2.1 sphinx-basic-ng-1.0.0b2 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 statsmodels-0.14.4 stdlib-list-0.11.0 sympy-1.13.1 tensorboard-2.18.0 tensorboard-data-server-0.7.2 texttable-1.7.0 threadpoolctl-3.5.0 tinycss2-1.4.0 torch-2.5.1 torchmetrics-1.6.0 tornado-6.4.1 tqdm-4.67.0 traitlets-5.14.3 typing-extensions-4.12.2 tzdata-2024.2 umap-learn-0.5.7 urllib3-2.2.3 webencodings-0.5.1 werkzeug-3.1.3 yarl-1.17.2 ```Could you provide more information that'd help me reproduce your issue? Which python version are you using? What version of numpy do you have already installed?
jules-samaran commented
Closing due to inactivity and inability to reproduce