Pinned Repositories
A-Deep-Learning-Model-for-Predicting-Next-Generation-Sequencing-Depth-from-DNA-Sequence
A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence
A-Fast-Transformer-based-General-Purpose-LosslessCompressor
This repository contains the source code and dataset link mentioned in WWW 2022 accepted paper "TRACE:A Fast Transformer-based General-Purpose LosslessCompressor".
antibioticsai
Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"
BDRL
The source code of the paper "BDRL: Combining Bert and Deep Reinforcement Learning to learn the Combinatorial Optimization Algorithms over Graphs"
Best-websites-a-programmer-should-visit
:link: Some useful websites for programmers.
BioChem-Err-DNA
BLEEP
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
CandyCrunch
Predicting glycan structure from LC-MS/MS data
Chamaeleo
BGI DNA Storage Kit
charm
cao-ben's Repositories
cao-ben/antibioticsai
Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"
cao-ben/BLEEP
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
cao-ben/CandyCrunch
Predicting glycan structure from LC-MS/MS data
cao-ben/charm
cao-ben/chemprop
Message Passing Neural Networks for Molecule Property Prediction
cao-ben/clash-for-linux
Linux 端使用 Clash 作为代理工具
cao-ben/ConGI
cao-ben/deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
cao-ben/deepdistilling
Mechanistically interpretable neurosymbolic AI (Nature Comput Sci 2024): losslessly compressing NNs to computer code and discovering new algorithms which generalize out-of-distribution and outperform human-designed algorithms
cao-ben/DNA-Storage-Transform
Single Read Reconstruction for DNA Data Storage Using Transformers (official implementation)
cao-ben/DNA-Synthetic-Steganography-Based-on-Conditional-Probability-Adaptive-Coding
cao-ben/DSI-QG
The official repository for "Bridging the Gap Between Indexing and Retrieval for Differentiable Search Index with Query Generation", Shengyao Zhuang, Houxing Ren, Linjun Shou, Jian Pei, Ming Gong, Guido Zuccon and Daxin Jiang.
cao-ben/genslm
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
cao-ben/GNNome-assembly
Learning to untangle genome assembly with graph neural networks.
cao-ben/Graph-Neural-Networks-in-Life-Sciences
cao-ben/HE2RNA_code
Train a model to predict gene expression from histology slides.
cao-ben/histocartography
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
cao-ben/KMVO-algorithm
This program is the source code in our paper, KMVO Algorithm to Construct DNA Storage Codes
cao-ben/Modulation-based-DNA-storage
cao-ben/ncNet
ncNet, a Transformer-based model for supporting NL2VIS.
cao-ben/PEKS
Implementation of Public Key Encryption with Keyword Search
cao-ben/pykan
Kolmogorov Arnold Networks
cao-ben/python-wheels
Prebuilt python wheels.
cao-ben/rfamgen
Code repository of "Deep generative design of RNA family sequences"
cao-ben/RNA-GAN
Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods
cao-ben/scButterfly
A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
cao-ben/scButterfly_source
Source codes for the reproduction of scButterfly
cao-ben/seqrequester
A tool for summarizing, extracting, generating and modifying DNA sequences.
cao-ben/UTR-LM
cao-ben/zfec
zfec -- an efficient, portable erasure coding tool