Snippy is a SNP annotation tool that annotates point mutations and indels with functional data relevant to cancer researchers using various SNP tools.
Snippy is designed with Django, so all the directories and files are following Django naming convention.
├── db.sqlite3 # Django database
├── example\ VCF\ files # Example files for testing
│ ├── NCI-ADR-RES-test2.vcf
│ └── SW-620-test.vcf
├── manage.py
├── media # All files, uploaded or downloaded, generated by project
│ ├── NCI-ADR-RES-test.vcf
│ ├── NCI-ADR-RES-test2.vcf
│ ├── .....
│ ├── SW-620-test.vcf
│ ├── germline_mutation-36.tsv
│ └── test.tsv
├── oncotator # First Django App to manage basic functions
│ ├── __init__.py
│ ├── __init__.pyc
│ ├── admin.py # Grants access to database to admin
│ ├── admin.pyc
│ ├── forms.py # Defines forms used for templates (HTML files)
│ ├── forms.pyc
│ ├── migrations # manages and screenshots database changes
│ │ ├── 0001_initial.py
│ │ ├──.....
│ │ ├── 0009_remove_csvfile_submitter.pyc
│ │ ├── __init__.py
│ │ └── __init__.pyc
│ ├── models.py # define models (objects/database columns) for project
│ ├── models.pyc
│ ├── tests.py
│ ├── views.py # Manages View componenet of Django project
│ └── views.pyc
└── snippy # Second App to manage more specific tasks for Snippy app
├── __init__.py
├── __init__.pyc
├── forms.py # Defines forms used for templates (HTML files)
├── forms.pyc
├── settings.py # setting file for Django project
├── settings.pyc
├── static # CSS, JavaScript and images for entire project
│ ├── Grid.css
│ ├── animate.css
│ ├── d3.js
│ ├── d3.min.js
│ ├── download-app-android.png
│ ├── download-app.svg
│ ├── germline_mutation.tsv
│ ├── ionicons.eot
│ ├── ionicons.svg
│ ├── ionicons.ttf
│ ├── ionicons.woff
│ ├── ionicons_min.css
│ ├── jquery.csvToTable.js
│ ├── jquery.waypoints.min.js
│ ├── normalize.css
│ ├── queries.css
│ ├── script.js
│ ├── snippy_home.jpg
│ ├── snippy_logo_black.png
│ ├── snippy_logo_white.png
│ ├── snps.png
│ ├── sorttable.js
│ ├── style.css
│ └── test.tsv
├── templates # HTML files for project
│ ├── base.html # Base HTML, extended by child pages
│ ├── oncotator # HTML files for Snippy
│ │ ├── contact_us.html
│ │ ├── how_it_works.html
│ │ ├── index.html
│ │ ├── result.html
│ │ ├── sign_up.html
│ │ ├── sign_up_form.html
│ │ ├── snp_tools.html
│ │ ├── snpdetail.html
│ │ └── tools.html
│ └── registration # manages login related HTML pages
│ └── login.html
├── urls.py # URL patterns for projects and how to interprit patterns and redirct to related views functions
├── urls.pyc
├── views.py # Manages View componenet of snippy App
├── views.pyc
├── wsgi.py
└── wsgi.pyc