caravagn
I run the Cancer Data Science Laboratory (caravagnalab) at the University of Trieste, and this is my personal (caravagn) Github space.
University of TriesteTrieste, Itally
Pinned Repositories
Bootstrap-based-Learning
Bootstrap-based Learning
evoverse.datasets
Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
GDA
Genome Data Analytics (DSSC 2021)
revolver.misc
Data released with the REVOLVER package, example vignettes and case studies.
BMix
Binomial and Beta-Binomial mixture models for counts data.
CNAqc
CNAqc - Copy Number Alteration (CNA) Quality Check package
ctree
Clone trees for Cancer Evolution studies from bulk sequencing data.
mobster
Model-based subclonal deconvolution from bulk sequencing.
revolver
REVOLVER - Repeated Evolution in Cancer
VIBER
VIBER - Variational Binomial Mixtures
caravagn's Repositories
caravagn/evoverse.datasets
Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
caravagn/GDA
Genome Data Analytics (DSSC 2021)
caravagn/revolver.misc
Data released with the REVOLVER package, example vignettes and case studies.
caravagn/Bootstrap-based-Learning
Bootstrap-based Learning
caravagn/evoverse
The evoverse is a package to implement cancer evolution analysis on multi-sample cancer sequecing data.
caravagn/cancer_bioinformatics
Cancer Bioinformatics training session for the Evolutionary Biology and Ecology of Cancer school, Wellcome Trust 2022.
caravagn/CompBio2022
CompBio Classes DSSC 2022
caravagn/mtree
Mutation tree from binary bulk sequencing data
caravagn/pio
Pretty I/O output to the console
caravagn/GBM-Stat-testing
Statistical testing for GBM Margin/ Primary tumours
caravagn/GP-correction-maps
Matching models across abstraction levels with Gaussian Processes.
caravagn/GP-Heterogenous-SIR
caravagn/mobster_supp_data
Supplementary Data released with Caravagna et al. Subclonal reconstruction of tumors by using machine learning and population genetics. Nature Genetics volume 52, 898–907(2020).
caravagn/programming_utils_c
C utilities for the programming classes at units.
caravagn/SEMM_2020
Slides and code for the SEMM Advanced Bioinformatics Workshop (October 2020)
caravagn/test_c_classrom