AlphaMissense_hg38.tsv.gz tabix indexing issue VEP
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Katerina10-cloud commented
I'm experiencing the issue with the tabix
indexing of AlphaMissense_hg38.tsv.gz
file.
I've installed alphamissense plugin in VEP and have downloaded the requested files and launch the tabix command before use it.
As I know IIRC file is already compressed with bgzip.
For indexing I use tabix Singularity image tabix_v0.2.6.sif
The command is: singularity exec tabix_v0.2.6.sif tabix -s 1 -b 2 -e 2 -f -S 1 AlphaMissense_hg38.tsv.gz
The error of command run:
INFO: Converting SIF file to temporary sandbox...
open: No such file or directory
[tabix] was bgzip used to compress this file? AlphaMissense_hg38.tsv.gz
INFO: Cleaning up image...
Any suggestions and ideas regarding this issue will be appreciated
Katerina10-cloud commented
Keeping track of this issue: https://www.biostars.org/p/9580275/
https://www.biostars.org/p/9576892/