File error SEQUENZA_CNAqc
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valerianilucrezia commented
Error when running SEQUENZA_CNAqc pipeline:
Error: The size of the connection buffer (999999999) was not large enough
to fit a complete line:
* Increase it by setting `Sys.setenv("VROOM_CONNECTION_SIZE")`
x Seqz pre-processing [sequenza.extract] ... failed
Maybe due to some memory issues.
valerianilucrezia commented
The error is due to the gzipped file.seqz.gz
given as input, to solve this issue as been added a command to gunzip the file before running the computation.