caravagnalab/nextflow_modules

File error SEQUENZA_CNAqc

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Error when running SEQUENZA_CNAqc pipeline:

Error: The size of the connection buffer (999999999) was not large enough
  to fit a complete line:
    * Increase it by setting `Sys.setenv("VROOM_CONNECTION_SIZE")`
  x Seqz pre-processing [sequenza.extract] ... failed

Maybe due to some memory issues.

The error is due to the gzipped file.seqz.gz given as input, to solve this issue as been added a command to gunzip the file before running the computation.