carlaml/LDpred-funct

Issues

• Column 5 in the output file Polygenic risk score for each individual in the validation.

  #13 opened 6 months ago
  0

• Unable to download 1000G_Phase3_baselineLD_ldscores.tgz 1000G_Phase3_baselineLD_v1.1_ldscores.tgz, 1000G_Phase3_baselineLD_v2.0_ldscores.tgz, 1000G_Phase3_baselineLD_v2.1_ldscores.tgz

  #12 opened a year ago
  2

• Index out of bounds

  #11 opened 2 years ago
  2

• Can't correctly install LDpred on a server

  #10 opened 3 years ago
  0

• Can't run through the test data provided

  #9 opened 3 years ago
  0

• Prediction R2 exceeding h2g

  #8 opened 4 years ago
  0

• Reported R2 accuracy metric

  #7 opened 4 years ago
  0

• Python3

  #6 opened 4 years ago
  0

• Question about input file

  #5 opened 4 years ago
  1

• "UnboundLocalError" during Step 2 when running LDpred-funct

  #4 opened 5 years ago
  3

• Separate genotyping files used for LD-reference and validation(PRS)

  #3 opened 5 years ago
  3

• Questions about LD files to use

  #2 opened 6 years ago
  2

• LDSC Per Snp Heritability

  #1 opened 6 years ago
  1