carlbfrederick/ohiCovidMetrics

Issues

• Change Critical label to "Critically high"

  #56 opened 4 years ago by carlbfrederick
  0

• Remove testing target from the system

  #55 opened 4 years ago by carlbfrederick
  1

• test process_* files for identical output

  #26 opened 4 years ago by carlbfrederick
  3

• Add moving averages to summary rows in output data frame

  #46 opened 4 years ago by carlbfrederick
  2

• fix label for testing doco

  #50 opened 4 years ago by carlbfrederick
  1

• Testing % positive time frame

  #53 opened 4 years ago by carlbfrederick
  0

• quick fixes

  #52 opened 4 years ago by carlbfrederick
  2

• Additional data sources: Hopkins and NYTimes

  #10 opened 4 years ago by carlbfrederick
  2

• use one-sided alternatives in the rev cusum procedure

  #25 opened 4 years ago by klittle314
  2

• List in documentation that Testing metrics will be based on different source than Historical Data Table

  #22 opened 4 years ago by carlbfrederick
  1

• Add sort-order var for classification variables

  #32 opened 4 years ago by carlbfrederick
  1

• make file checker tests for mega combined file

  #43 opened 4 years ago by carlbfrederick
  1

• Change N/A in non-sig trajectories to NS

  #49 opened 4 years ago by carlbfrederick
  1

• write tests for some functions

  #12 opened 4 years ago by carlbfrederick
  1

• Add new 350+ Burden Class category and change Composite metric

  #47 opened 4 years ago by carlbfrederick
  1

• Change Testing Composite Classes

  #48 opened 4 years ago by carlbfrederick
  1

• Be sure that St. Croix is always St. Croix

  #39 opened 4 years ago by carlbfrederick
  0

• Change moving average % to proper calculation

  #41 opened 4 years ago by carlbfrederick
  2

• Ensure that all ED and Mayo FLAGs are present for daily and summary rows.

  #45 opened 4 years ago by carlbfrederick
  0

• Update Burden classification with more categories

  #42 opened 4 years ago by carlbfrederick
  2

• Remove excess columns from output file.

  #44 opened 4 years ago by carlbfrederick
  1

• check new Testing_Composite_Class hack

  #40 opened 4 years ago by carlbfrederick
  1

• insert 0s for ILI daily metrics where there are no values for county

  #38 opened 4 years ago by carlbfrederick
  1

• write an appending file function that adds 7 day moving average for Testing Percent Positive

  #37 opened 4 years ago by carlbfrederick
  0

• change Testing Composite to % positive for now

  #36 opened 4 years ago by carlbfrederick
  0

• change output so rates don't look like counts

  #31 opened 4 years ago by carlbfrederick
  0

• Confirm that missing values are when denominator is 0

  #35 opened 4 years ago by carlbfrederick
  0

• Add new Testing Volume/Targets code

  #34 opened 4 years ago by carlbfrederick
  0

• Add in explicit zeros for counties in ILI/CLI

  #33 opened 4 years ago by carlbfrederick
  0

• Add in Jurisdictions for non-county LHDs

  #14 opened 4 years ago by carlbfrederick
  1

• Non-negative correction for test_daily misses some instances.

  #17 opened 4 years ago by SteveGoldstein
  1

• test_daily and test_cum values wrong for about 43 counties.

  #18 opened 4 years ago by SteveGoldstein
  1

• Create function for merging flat files at least by data source for easier ingestion into Tableau

  #4 opened 4 years ago by carlbfrederick
  1

• add daily counts of cases and testing to clean_* output

  #27 opened 4 years ago by carlbfrederick
  1

• fix `rolling_week()` so that it doesn't break if only pulling 14 days

  #30 opened 4 years ago by carlbfrederick
  1

• Download data as txt file

  #15 opened 4 years ago by SteveGoldstein
  2

• Reconcile Dates across metrics

  #29 opened 4 years ago by carlbfrederick
  0

• add `fill_counties()` similar to `fill_dates()` but for counties so that populations (among other things) add up correctly

  #28 opened 4 years ago by carlbfrederick
  1

• Vignette doesn't build.

  #20 opened 4 years ago by SteveGoldstein
  0

• producing-confirmed-case-mertics.Rmd: data frame hdt_out has Trajectory as character rather than numeric

  #23 opened 4 years ago by klittle314
  1

• integrate cummin fix to correct negative daily counts

  #24 opened 4 years ago by carlbfrederick
  0

• Installing package issue (MacOS)

  #21 opened 4 years ago by SteveGoldstein
  0

• test_cum is wrong because hdt$NEGATIVE is a factor

  #16 opened 4 years ago by SteveGoldstein
  1

• Finalize for Tableau Ingestion

  #13 opened 4 years ago by carlbfrederick
  0

• Vignette documenting entire workflow for various scenarios

  #5 opened 4 years ago by carlbfrederick
  1

• confirm we want unit pseudocounts for `score_trajectory()` but not to calc p-value

  #8 opened 4 years ago by carlbfrederick
  1

• confirm my `clean_reversal()` is equivalent to Jeff's calculations

  #9 opened 4 years ago by carlbfrederick
  2

• Finish case metric functions

  #6 opened 4 years ago by carlbfrederick
  1

• Potentially fix negatives in counties then sum counties to state levels

  #7 opened 4 years ago by carlbfrederick
  0

• change calcs so that state totals are calculated from counties post reversal cleaning

  #11 opened 4 years ago by carlbfrederick
  0