Pinned Repositories
acdcourse
Course Material on Analyzing Cohort Datasets in R.
Buckley_Lab_SIP_project_protocols
Buckley lab protocols for conducting SIP studies
CC-etiquette
Using a coding etiquette to ensure code readability
CJM_Supplement
Supplementary data for: Compositional analysis: a valid approach to analyze microbiome high throughput sequencing data
Diversity_Productivity
Microhabitats associate with bacterial biodiversity-ecosystem function relationships
Final_PAFL_Trophicstate
This is the repository for the manuscript "Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla" written by Marian L. Schmidt, Jeffrey D. White, and Vincent J. Denef.
HJA-streams
masame
Code to run the shiny functions for the MASAME suite
MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
phyloseq-extras
Scripts for doing stuff with phyloseq objects.
carol-kim's Repositories
carol-kim/acdcourse
Course Material on Analyzing Cohort Datasets in R.
carol-kim/Buckley_Lab_SIP_project_protocols
Buckley lab protocols for conducting SIP studies
carol-kim/CC-etiquette
Using a coding etiquette to ensure code readability
carol-kim/CJM_Supplement
Supplementary data for: Compositional analysis: a valid approach to analyze microbiome high throughput sequencing data
carol-kim/Diversity_Productivity
Microhabitats associate with bacterial biodiversity-ecosystem function relationships
carol-kim/Final_PAFL_Trophicstate
This is the repository for the manuscript "Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla" written by Marian L. Schmidt, Jeffrey D. White, and Vincent J. Denef.
carol-kim/HJA-streams
carol-kim/masame
Code to run the shiny functions for the MASAME suite
carol-kim/MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
carol-kim/phyloseq-extras
Scripts for doing stuff with phyloseq objects.
carol-kim/raup_crick
Fast version of raup_crick_abundance (Stegen et al. 2013)