/vcf2Jaccard

Create a mean Jaccard similarity pairwise data frame from ipyrad vcf file

Primary LanguageHTMLGNU General Public License v3.0GPL-3.0

vcf2Jaccard

Converts the variant-calling files (vcf) from ipyrad output to a sample pairwise dataframe of mean Jaccard similarity coefficients (aka Jaccard index, or Intersection over Union) across all SNPs.