carolzhou/multiPhATE2

Add a line to phate_annotation.py

Closed this issue · 1 comments

I couldn't quite figure out how to do this as a pull request -

I added a clause to suppress a warning when using a custom blast DB.

in phate_annotation.py

                pass

            elif dbName.lower() == 'refseqprotein':
                pass

            elif dbName.lower() == 'customprotein':
                pass

            elif dbName.lower() == 'pvogs': # self.name = hit header, which contains VOGid and NCBIid + function description
                # If >1 VOGid, no matter, as it's a single protein sequence, with membership in >1 group.
                description = ''
                if self.name:
                    words = self.name.split(' ')
                    description = words[1:]
                VOGlist = description

Thanks again.

Thanks, that helps!