carpentries-incubator/pangenomics

Issues

• Second round reviews

  #61 opened 6 months ago by nselem
  0

• If sustained learning is a goal of this workshop, how do you evaluate this?

  #63 opened 5 months ago by nselem
  0

• Is the cloud set up available to participants after the workshop to enable continued learning?

  #62 opened 5 months ago by nselem
  0

• Figure 3 would benefit from greater explanation as to how learners are self-assessing their own proficiency as a percent score.

  #69 opened 6 months ago by nselem
  0

• I would tighten some of the background on the "Story of the Workshop" section.

  #68 opened 6 months ago by nselem
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• 2) Figure 1 presents what is ultimately a relatively simple point, but the figure itself winds up being challenging to parse. I'm not sure a figure is even really necessary.

  #67 opened 6 months ago by nselem
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• The main issue is that the results, in addition to be only declarative, remain rather vague: For Figure 4, it would be good to have information about how results depend on the background of participants or whether the results depend on lessons for example (i.e. +/- TDA).

  #66 opened 6 months ago by nselem
  0

• Typos and wording

  #65 opened 6 months ago by nselem
  0

• Can you provide specific examples of how you achieve this?

  #64 opened 6 months ago by nselem
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• Instructor Notes

  #46 opened 2 years ago by nselem
  0

• Improve TDA episodes

  #42 opened 7 months ago by nselem
  5

• This issue of preparation is borne out in two areas. First, the material in lessons 1 and 3 on command-line basics and an introduction to Python seems to be at a different level of difficulty compared with some of the more advanced material in lesson 4.

  #59 opened 7 months ago by shadayguerrero
  1

• Reviewers comments

  #58 opened 9 months ago by nselem
  1

• A supplementary figure was provided (different from the one in the paper) but it is nowhere discussed nor explained what we see and are supposed to learn from it

  #60 opened 8 months ago by Czirion
  1

• Edit long lines of code

  #52 opened a year ago by Czirion
  0

• Improve GET_HOLOGUES episode

  #36 opened 2 years ago by Czirion
  4

• Improve Anvio episode

  #37 opened 2 years ago by Czirion
  0

• Posible mejora al latex

  #49 opened a year ago by nselem
  0

• practical tda-episode

  #41 opened a year ago by nselem
  1

• Data Disaster

  #32 opened a year ago by Czirion
  2

• Other resources

  #44 opened a year ago by HaydeePeruyero
  4

• Manual Pangenome

  #40 opened a year ago by nselem
  3

• Remove CompGen and Mining

  #26 opened a year ago by Czirion
  0

• Create a TDA introduction

  #39 opened 2 years ago by nselem
  1

• Downloading Episode

  #33 opened 2 years ago by Czirion
  2

• Annotation episode

  #45 opened 2 years ago by Czirion
  5

• Pangolin episode

  #38 opened 2 years ago by Czirion
  3

• Intro to bash

  #51 opened 2 years ago by Czirion
  0

• Intro to bash

  #48 opened 2 years ago by Czirion
  2

• Develop Other Resources

  #25 opened 2 years ago by Czirion
  0

• Put all data and backup directory in Zenodo

  #28 opened 2 years ago by Czirion
  3

• Description of lesson in landing page

  #29 opened 2 years ago by Czirion
  0

• Introduction episode

  #31 opened 2 years ago by Czirion
  3

• Spreadsheet link in Workshop Overview

  #27 opened 2 years ago by Czirion
  0

• Annotation Episode

  #34 opened 2 years ago by Czirion
  2

• Curating output episode

  #35 opened 2 years ago by Czirion
  2

• Setup

  #15 opened 2 years ago by Czirion
  2

• agalacitae misspelled

  #16 opened 2 years ago by Czirion
  1

• missing solution

  #24 opened 2 years ago by aursula
  1

• Improve Get Homologues

  #20 opened 2 years ago by Czirion
  1

• Issue in Fig3

  #22 opened 2 years ago by aursula
  1

• Improve Curating Output Files

  #21 opened 2 years ago by Czirion
  1

• Missing content

  #23 opened 2 years ago by aursula
  1

• Annotation exercise 1

  #18 opened 2 years ago by Czirion
  1

• Box in annotation episode

  #17 opened 2 years ago by Czirion
  1

• Dataset description Intro to Pangenomics

  #14 opened 2 years ago by Czirion
  1

• Discuss the terms in the Introduction

  #30 opened 2 years ago by Czirion
  0

• Images of Intro to Pangenomics

  #13 opened 2 years ago by Czirion
  0

• Annotation wrong output

  #19 opened 2 years ago by Czirion
  0

• get homologues single copy flag

  #12 opened 2 years ago by nselem
  1